GWAS598446_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS598446_H (BMI-adjusted hip circumference QTL GWAS598446 (human)) Homo sapiens

Symbol: GWAS598446_H
Name: BMI-adjusted hip circumference QTL GWAS598446 (human)
RGD ID: 406949470
Trait: BMI-adjusted hip circumference
Measurement Type: hip circumference   (CMO:0000014)    
LOD Score: Not Available
P Value: 6.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3841,699,590 - 1,699,591RGD_MAPPER_PIPELINEGRCh38
GRCh3741,701,317 - 1,701,318RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS598446_HHumanhip circumference  IAGPrs2247341405850206Based on the EFO term IDGWAS_CATALOGPMID:25673412

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS598446_HHumanBMI-adjusted hip circumference  IAGPrs2247341405850206 GWAS_CATALOGPMID:25673412

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1350910SLBPstem-loop histone mRNA binding protein416927311712319Human


Peak: (rs2247341)
Human AssemblyChrPosition (strand)Source
GRCh3841,699,590 - 1,699,591RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597091832GWAS1187906_HBMI-adjusted hip circumference QTL GWAS1187906 (human)0.0000008BMI-adjusted hip circumferencehip circumference (CMO:0000014)416995901699591Human
406949470GWAS598446_HBMI-adjusted hip circumference QTL GWAS598446 (human)6e-10BMI-adjusted hip circumferencehip circumference (CMO:0000014)416995901699591Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS598446_H GCST004067 Hip circumference adjusted for BMI up to 56,910 European ancestry men, up to 86,570 European ancestry women A 0.355 6E-10 9.222 rs2247341 0.0226 BMI-adjusted hip circumference (EFO:0008039)
 PMID:25673412
GWAS1701638_H GCST000817 Height 133,653 European ancestry individuals A 0.36 2E-11 10.699 rs2247341 0.025 body height (OBA:VT0001253)
 PMID:20881960
GWAS1187906_H GCST004067 Hip circumference adjusted for BMI up to 56,910 European ancestry men, up to 86,570 European ancestry women A 0.355 8E-7 6.097 rs2247341 0.0235 BMI-adjusted hip circumference (EFO:0008039)
 PMID:25673412
Database
Acc Id
Source(s)
GWAS Catalog GCST004067 GWAS Catalog

Note Type Note Reference