GWAS596325_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS596325_H (adolescent idiopathic scoliosis QTL GWAS596325 (human)) Homo sapiens

Symbol: GWAS596325_H
Name: adolescent idiopathic scoliosis QTL GWAS596325 (human)
RGD ID: 406947349
Trait: adolescent idiopathic scoliosis
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3834,416,567 - 4,416,568RGD_MAPPER_PIPELINEGRCh38
GRCh3734,458,251 - 4,458,252RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS596325_HHumanadolescent idiopathic scoliosis  IAGPrs698210405850206 GWAS_CATALOGPMID:30019117
Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
36947411SUMF1sulfatase modifying factor 1340344864467269Human

Position Markers

Peak: (rs698210)
Human AssemblyChrPosition (strand)Source
GRCh3834,416,567 - 4,416,568RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406947349GWAS596325_Hadolescent idiopathic scoliosis QTL GWAS596325 (human)0.000007adolescent idiopathic scoliosis344165674416568Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS596325_H GCST006287 Adolescent idiopathic scoliosis 196 cases, 303 controls ? NR 0.000007 5.155 rs698210 N/A adolescent idiopathic scoliosis (EFO:0005423)
 PMID:30019117
Database Acc Id Source(s)
GWAS Catalog GCST006287 GWAS Catalog

RGD Curation Notes
Note Type Note Reference