GWAS596005_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS596005_H (airway wall thickness measurement QTL GWAS596005 (human)) Homo sapiens

Symbol: GWAS596005_H
Name: airway wall thickness measurement QTL GWAS596005 (human)
RGD ID: 406947029
Trait: airway wall thickness measurement
Measurement Type: lung morphological measurement   (CMO:0000858)    
LOD Score: Not Available
P Value: 1.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38778,060,571 - 78,060,572RGD_MAPPER_PIPELINEGRCh38
GRCh37777,689,888 - 77,689,889RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS596005_HHumanlung morphological measurement  IAGPrs10251504405850206Based on the EFO term IDGWAS_CATALOGPMID:25517131

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS596005_HHumanairway wall thickness measurement  IAGPrs10251504405850206 GWAS_CATALOGPMID:25517131
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735850MAGI2membrane associated guanylate kinase, WW and PDZ domain containing 277801705579453667Human

Position Markers

Peak: (rs10251504)
Human AssemblyChrPosition (strand)Source
GRCh38778,060,571 - 78,060,572RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406947029GWAS596005_Hairway wall thickness measurement QTL GWAS596005 (human)0.000001airway wall thickness measurementlung morphological measurement (CMO:0000858)77806057178060572Human
406947096GWAS596072_Hairway wall thickness measurement QTL GWAS596072 (human)0.000002airway wall thickness measurementlung morphological measurement (CMO:0000858)77806057178060572Human
406947023GWAS595999_Hairway wall thickness measurement QTL GWAS595999 (human)0.0000006airway wall thickness measurementlung morphological measurement (CMO:0000858)77806057178060572Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS595999_H GCST002794 Airway wall thickness 2,640 individuals ? NR 6E-7 6.222 rs10251504 0.035 airway wall thickness measurement (EFO:0006898)
 PMID:25517131
GWAS596005_H GCST002794 Airway wall thickness 2,640 individuals ? NR 0.000001 6 rs10251504 0.036 airway wall thickness measurement (EFO:0006898)
 PMID:25517131
GWAS596072_H GCST002794 Airway wall thickness 2,640 individuals ? NR 0.000002 5.699 rs10251504 0.036 airway wall thickness measurement (EFO:0006898)
 PMID:25517131
Database Acc Id Source(s)
GWAS Catalog GCST002794 GWAS Catalog

RGD Curation Notes
Note Type Note Reference