GWAS594719_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS594719_H (blood protein measurement QTL GWAS594719 (human)) Homo sapiens

Symbol: GWAS594719_H
Name: blood protein measurement QTL GWAS594719 (human)
RGD ID: 406945743
Trait: blood protein measurement
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 3E-145
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381943,183,618 - 43,183,619RGD_MAPPER_PIPELINEGRCh38
GRCh371943,687,770 - 43,687,771RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS594719_HHumanblood protein measurement  IAGPrs10420089405850206Based on the EFO term IDGWAS_CATALOGPMID:30072576

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS594719_HHumanblood protein measurement  IAGPrs10420089405850206 GWAS_CATALOGPMID:30072576
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1353998PSG5pregnancy specific beta-1-glycoprotein 5194316774343186536Human

Position Markers

Peak: (rs10420089)
Human AssemblyChrPosition (strand)Source
GRCh381943,183,618 - 43,183,619RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559110SCL22_HSerum cholesterol level QTL 22 (human)3.590.000241Lipid levelLDL cholesterol193190759457907594Human
406927431GWAS576407_Hblood protein measurement QTL GWAS576407 (human)1e-16blood protein measurementblood protein measurement (CMO:0000028)194318361843183619Human
406936825GWAS585801_Hblood protein measurement QTL GWAS585801 (human)2e-259blood protein measurementblood protein measurement (CMO:0000028)194318361843183619Human
1331657COPD9_HChronic obstructive pulmonary disease QTL 9 (human)1.94Chronic airflow obstructionpost-bronchodilator FEV1193102176057021760Human
406945743GWAS594719_Hblood protein measurement QTL GWAS594719 (human)3e-145blood protein measurementblood protein measurement (CMO:0000028)194318361843183619Human
406981885GWAS630861_Hblood protein measurement QTL GWAS630861 (human)3e-99blood protein measurementblood protein measurement (CMO:0000028)194318361843183619Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS576407_H GCST006585 Blood protein levels 3,200 European ancestry individuals T 0.606875 1E-16 16 rs10420089 0.20437546 blood protein measurement (EFO:0007937)
 PMID:30072576
GWAS585801_H GCST006585 Blood protein levels 3,200 European ancestry individuals T 0.606875 2E-259 258.699 rs10420089 0.7778419 blood protein measurement (EFO:0007937)
 PMID:30072576
GWAS594719_H GCST006585 Blood protein levels 3,200 European ancestry individuals T 0.606875 3E-145 144.523 rs10420089 0.60630053 blood protein measurement (EFO:0007937)
 PMID:30072576
GWAS630861_H GCST006585 Blood protein levels 3,200 European ancestry individuals T 0.606875 3E-99 98.523 rs10420089 0.5144115 blood protein measurement (EFO:0007937)
 PMID:30072576
Database Acc Id Source(s)
GWAS Catalog GCST006585 GWAS Catalog

RGD Curation Notes
Note Type Note Reference