GWAS593389_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS593389_H (eosinophil percentage of leukocytes QTL GWAS593389 (human)) Homo sapiens

Symbol: GWAS593389_H
Name: eosinophil percentage of leukocytes QTL GWAS593389 (human)
RGD ID: 406944413
Trait: eosinophil quantity   (VT:0002602)    
Measurement Type: blood eosinophil count   (CMO:0000033)    
blood eosinophil count to total leukocyte count ratio   (CMO:0000369)    
LOD Score: Not Available
P Value: 2.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh389132,984,312 - 132,984,313RGD_MAPPER_PIPELINEGRCh38
GRCh379135,859,699 - 135,859,700RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS593389_HHumanblood eosinophil count  IAGPrs189806022405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494
GWAS593389_HHumanblood eosinophil count to total leukocyte count ratio  IAGPrs189806022405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS593389_HHumaneosinophil quantity  IAGPrs189806022405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS593389_HHumaneosinophil count  IAGPrs189806022405850206 GWAS_CATALOGPMID:32888494
GWAS593389_HHumaneosinophil percentage of leukocytes  IAGPrs189806022405850206 GWAS_CATALOGPMID:32888494
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1323334GFI1Bgrowth factor independent 1B transcriptional repressor9132945531132993434Human

Position Markers

Peak: (rs189806022)
Human AssemblyChrPosition (strand)Source
GRCh389132,984,312 - 132,984,313RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406944413GWAS593389_Heosinophil percentage of leukocytes QTL GWAS593389 (human)2e-10eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)9132984312132984313Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS593389_H GCST90002382 Eosinophil percentage of white cells 408,112 British individuals C 0.00180400000000003 2E-10 9.699 rs189806022 0.18746506 eosinophil percentage of leukocytes (EFO:0007991)
 PMID:32888494
None Available GCST90002381 Eosinophil counts 408,112 British individuals C 0.00180400000000003 2E-10 9.699 rs189806022 0.18666741 eosinophil count (EFO:0004842)
 PMID:32888494
Database Acc Id Source(s)
GWAS Catalog GCST90002381 GWAS Catalog
  GCST90002382 GWAS Catalog

RGD Curation Notes
Note Type Note Reference