GWAS593352_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS593352_H (eosinophil percentage of leukocytes QTL GWAS593352 (human)) Homo sapiens

Symbol: GWAS593352_H
Name: eosinophil percentage of leukocytes QTL GWAS593352 (human)
RGD ID: 406944376
Trait: eosinophil percentage of leukocytes
Measurement Type: blood eosinophil count to total leukocyte count ratio   (CMO:0000369)    
LOD Score: Not Available
P Value: 6.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh387135,563,538 - 135,563,539RGD_MAPPER_PIPELINEGRCh38
GRCh377135,248,286 - 135,248,287RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS593352_HHumanblood eosinophil count to total leukocyte count ratio  IAGPrs12707240405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS593352_HHumaneosinophil percentage of leukocytes  IAGPrs12707240405850206 GWAS_CATALOGPMID:32888494
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1319746NUP205nucleoporin 2057135557917135648753Human

Position Markers

Peak: (rs12707240)
Human AssemblyChrPosition (strand)Source
GRCh387135,563,538 - 135,563,539RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406944376GWAS593352_Heosinophil percentage of leukocytes QTL GWAS593352 (human)6e-12eosinophil percentage of leukocytesblood eosinophil count to total leukocyte count ratio (CMO:0000369)7135563538135563539Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS593352_H GCST90002382 Eosinophil percentage of white cells 408,112 British individuals G 0.317052 6E-12 11.222 rs12707240 0.01655814 eosinophil percentage of leukocytes (EFO:0007991)
 PMID:32888494
Database Acc Id Source(s)
GWAS Catalog GCST90002382 GWAS Catalog

RGD Curation Notes
Note Type Note Reference