GWAS588227_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS588227_H (protein measurement QTL GWAS588227 (human)) Homo sapiens

Symbol: GWAS588227_H
Name: protein measurement QTL GWAS588227 (human)
RGD ID: 406939251
Trait: protein measurement
LOD Score: Not Available
P Value: 6E-251
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381162,616,243 - 62,616,244RGD_MAPPER_PIPELINEGRCh38
GRCh371162,383,715 - 62,383,716RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS588227_HHumanprotein measurement  IAGPrs12794886405850206 GWAS_CATALOGPMID:34648354
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1323698B3GAT3beta-1,3-glucuronyltransferase 3116261529662621986Human

Position Markers

Peak: (rs12794886)
Human AssemblyChrPosition (strand)Source
GRCh381162,616,243 - 62,616,244RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357380BW64_HBody weight QTL 64 (human)2.2Body weightpercent fat after exercise training116097893786978937Human
406939251GWAS588227_Hprotein measurement QTL GWAS588227 (human)6e-251protein measurement116261624362616244Human
406942568GWAS591544_Hgalactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 measurement QTL GWAS591544 (human)2e-149galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 measurement116261624362616244Human
406894094GWAS543070_Hgalactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 measurement QTL GWAS543070 (human)8e-63galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 measurement116261624362616244Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS543070_H GCST90241217 Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 levels (B3GAT3.6897.38.3) 3,301 European ancestry individuals C 0.707 8E-63 62.097 rs12794886 0.44 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 measurement (EFO:0801611)
 PMID:29875488
GWAS588227_H GCST90246542 Apolipoprotein A-II levels 10,708 European ancestry individuals C 0.69 6E-251 250.222 rs12794886 0.466 protein measurement (EFO:0004747)
 PMID:34648354
GWAS591544_H GCST90247678 Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 levels 10,708 European ancestry individuals C 0.69 2E-149 148.699 rs12794886 0.363 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 measurement (EFO:0801611)
 PMID:34648354
Database Acc Id Source(s)
GWAS Catalog GCST90246542 GWAS Catalog

RGD Curation Notes
Note Type Note Reference