GWAS587308_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS587308_H (hemoglobin measurement QTL GWAS587308 (human)) Homo sapiens

Symbol: GWAS587308_H
Name: hemoglobin measurement QTL GWAS587308 (human)
RGD ID: 406938332
Trait: hemoglobin measurement
Measurement Type: hemoglobin measurement   (CMO:0000508)    
LOD Score: Not Available
P Value: 1.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3812132,529,266 - 132,529,267RGD_MAPPER_PIPELINEGRCh38
GRCh3712133,105,852 - 133,105,853RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS587308_HHumanhemoglobin measurement  IAGPrs4242906405850206Based on the EFO term IDGWAS_CATALOGPMID:32888493

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS587308_HHumanhemoglobin measurement  IAGPrs4242906405850206 GWAS_CATALOGPMID:32888493

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
2303695FBRSL1fibrosin like 112132490151132585188Human


Peak: (rs4242906)
Human AssemblyChrPosition (strand)Source
GRCh3812132,529,266 - 132,529,267RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597051698GWAS1147772_Hhematocrit QTL GWAS1147772 (human)2e-14hematocrithematocrit (CMO:0000037)12132529266132529267Human
406938332GWAS587308_Hhemoglobin measurement QTL GWAS587308 (human)1e-15hemoglobin measurementhemoglobin measurement (CMO:0000508)12132529266132529267Human
406943774GWAS592750_Hhematocrit QTL GWAS592750 (human)5e-14hematocrithematocrit (CMO:0000037)12132529266132529267Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS587308_H GCST90002310 Hemoglobin concentration 563,946 European ancestry individuals G 0.230094 1E-15 15 rs4242906 0.018374 hemoglobin measurement (EFO:0004509)
 PMID:32888493
GWAS592750_H GCST90002308 Hematocrit 737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals G 0.298692 5E-14 13.302 rs4242906 N/A hematocrit (EFO:0004348)
 PMID:32888493
GWAS1147772_H GCST90002304 Hematocrit 562,259 European ancestry individuals G 0.230154 2E-14 13.699 rs4242906 0.017642 hematocrit (EFO:0004348)
 PMID:32888493
GWAS1736113_H GCST90002367 Red blood cell count 727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals G 0.30278 9E-29 28.046 rs4242906 N/A red blood cell density (OBA:2045260)
 PMID:32888493
Database
Acc Id
Source(s)
GWAS Catalog GCST90002310 GWAS Catalog

Note Type Note Reference