GWAS582478_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS582478_H (folic acid measurement QTL GWAS582478 (human)) Homo sapiens

Symbol: GWAS582478_H
Name: folic acid measurement QTL GWAS582478 (human)
RGD ID: 406933502
Trait: folic acid measurement
LOD Score: Not Available
P Value: 9.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38778,094,909 - 78,094,910RGD_MAPPER_PIPELINEGRCh38
GRCh37777,724,226 - 77,724,227RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS582478_HHumanfolic acid measurement  IAGPrs3779306405850206 GWAS_CATALOGPMID:29953918
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735850MAGI2membrane associated guanylate kinase, WW and PDZ domain containing 277801705579453667Human

Position Markers

Peak: (rs3779306)
Human AssemblyChrPosition (strand)Source
GRCh38778,094,909 - 78,094,910RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406933502GWAS582478_Hfolic acid measurement QTL GWAS582478 (human)0.000009folic acid measurement77809490978094910Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS582478_H GCST006137 Serum folate levels 1,999 Han Chinese ancestry individuals ? NR 0.000009 5.046 rs3779306 N/A folic acid measurement (EFO:0005111)
 PMID:29953918
Database Acc Id Source(s)
GWAS Catalog GCST006137 GWAS Catalog

RGD Curation Notes
Note Type Note Reference