GWAS582396_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS582396_H (adolescent idiopathic scoliosis QTL GWAS582396 (human)) Homo sapiens

Symbol: GWAS582396_H
Name: adolescent idiopathic scoliosis QTL GWAS582396 (human)
RGD ID: 406933420
Trait: adolescent idiopathic scoliosis
LOD Score: Not Available
P Value: 2.0E-29
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381523,643,119 - 23,643,120RGD_MAPPER_PIPELINEGRCh38
GRCh371523,888,266 - 23,888,267RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS582396_HHumanadolescent idiopathic scoliosis  IAGPrs11161318405850206 GWAS_CATALOGPMID:30019117
Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs11161318)
Human AssemblyChrPosition (strand)Source
GRCh381523,643,119 - 23,643,120RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
406933420GWAS582396_Hadolescent idiopathic scoliosis QTL GWAS582396 (human)2e-29adolescent idiopathic scoliosis152364311923643120Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS582396_H GCST006287 Adolescent idiopathic scoliosis 196 cases, 303 controls ? NR 2E-29 28.699 rs11161318 N/A adolescent idiopathic scoliosis (EFO:0005423)
 PMID:30019117
Database Acc Id Source(s)
GWAS Catalog GCST006287 GWAS Catalog

RGD Curation Notes
Note Type Note Reference