GWAS577393_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS577393_H (cigarettes per day measurement QTL GWAS577393 (human)) Homo sapiens

Symbol: GWAS577393_H
Name: cigarettes per day measurement QTL GWAS577393 (human)
RGD ID: 406928417
Trait: cigarettes per day measurement
LOD Score: Not Available
P Value: 2.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38316,805,459 - 16,805,460RGD_MAPPER_PIPELINEGRCh38
GRCh37316,846,967 - 16,846,968RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS577393_HHumancigarettes per day measurement  IAGPrs9881798405850206 GWAS_CATALOGPMID:36477530
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs9881798)
Human AssemblyChrPosition (strand)Source
GRCh38316,805,459 - 16,805,460RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406928417GWAS577393_Hcigarettes per day measurement QTL GWAS577393 (human)2e-16cigarettes per day measurement31680545916805460Human
406973955GWAS622931_Hcigarettes per day measurement QTL GWAS622931 (human)1e-15cigarettes per day measurement31680545916805460Human
406968166GWAS617142_Hschizophrenia QTL GWAS617142 (human)0.000007schizophrenia31680545916805460Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
406964107GWAS613083_Hneuroticism measurement QTL GWAS613083 (human)9e-10neuroticism measurement31680545916805460Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS577393_H GCST90243976 Cigarettes smoked per day 618,489 European ancestry individuals C 0.414 2E-16 15.699 rs9881798 0.0151 cigarettes per day measurement (EFO:0006525)
 PMID:36477530
GWAS613083_H GCST006476 Neuroticism 449,484 European ancestry individuals A NR 9E-10 9.046 rs9881798 6.123 neuroticism measurement (EFO:0007660)
 PMID:29942085
GWAS617142_H GCST003048 Schizophrenia 592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls C NR 0.000007 5.155 rs9881798 1.0526316 PMID:26198764
GWAS622931_H GCST90243987 Cigarettes smoked per day 783,784 European ancestry, East Asian ancestry, Hispanic or Latin American, African ancestry individuals C 0.397 1E-15 15 rs9881798 0.0131 cigarettes per day measurement (EFO:0006525)
 PMID:36477530
Database Acc Id Source(s)
GWAS Catalog GCST90243976 GWAS Catalog

RGD Curation Notes
Note Type Note Reference