GWAS576520_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS576520_H (schizophrenia QTL GWAS576520 (human)) Homo sapiens

Symbol: GWAS576520_H
Name: schizophrenia QTL GWAS576520 (human)
RGD ID: 406927544
Trait: schizophrenia
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382956,472 - 956,473RGD_MAPPER_PIPELINEGRCh38
GRCh372952,158 - 952,159RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS576520_HHumanschizophrenia  IAGPrs35244364405850206 GWAS_CATALOGPMID:35396580
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1350202SNTG2syntrophin gamma 229508491367613Human

Position Markers

Peak: (rs35244364)
Human AssemblyChrPosition (strand)Source
GRCh382956,472 - 956,473RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406927544GWAS576520_Hschizophrenia QTL GWAS576520 (human)0.000004schizophrenia2956472956473Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS576520_H GCST90128471 Schizophrenia 53,386 European ancestry cases, 77,258 European ancestry controls, 14,004 East Asian ancestry cases, 16,757 East Asian ancestry controls, 6,152 African American cases, 3,918 African American controls, 1,234 Latino cases, 3,090 Latino controls T 0.822 0.000004 5.398 rs35244364 0.95695 PMID:35396580
Database Acc Id Source(s)
GWAS Catalog GCST90128471 GWAS Catalog

RGD Curation Notes
Note Type Note Reference