GWAS569522_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS569522_H (cancer QTL GWAS569522 (human)) Homo sapiens

Symbol: GWAS569522_H
Name: cancer QTL GWAS569522 (human)
RGD ID: 406920546
Trait: cancer
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381623,621,362 - 23,621,363RGD_MAPPER_PIPELINEGRCh38
GRCh371623,632,683 - 23,632,684RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS569522_HHumancancer  IAGPrs180177132405850206 GWAS_CATALOGPMID:34290314
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1605949PALB2partner and localizer of BRCA2162360316523641310Human

Position Markers

Peak: (rs180177132)
Human AssemblyChrPosition (strand)Source
GRCh381623,621,362 - 23,621,363RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406920546GWAS569522_Hcancer QTL GWAS569522 (human)0.000008cancer162362136223621363Human
407169338GWAS818314_Hbreast carcinoma QTL GWAS818314 (human)1e-12breast carcinoma162362136223621363Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS569522_H GCST90027051 Cancer 56,634 White British ancestry cases, 218,196 White British ancestry controls ? NR 0.000008 5.097 rs180177132 1.98547 PMID:34290314
GWAS818314_H GCST90027052 Breast cancer 10,682 White British ancestry cases, 138,504 White British ancestry controls ? NR 1E-12 12 rs180177132 4.54031 breast carcinoma (EFO:0000305)
 PMID:34290314
Database Acc Id Source(s)
GWAS Catalog GCST90027051 GWAS Catalog

RGD Curation Notes
Note Type Note Reference