GWAS561801_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS561801_H (unipolar depression, bipolar disorder, schizophrenia QTL GWAS561801 (human)) Homo sapiens

Symbol: GWAS561801_H
Name: unipolar depression, bipolar disorder, schizophrenia QTL GWAS561801 (human)
RGD ID: 406912825
Trait: unipolar depression, bipolar disorder, schizophrenia
LOD Score: Not Available
P Value: 1.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh384154,367,038 - 154,367,039RGD_MAPPER_PIPELINEGRCh38
GRCh374155,288,190 - 155,288,191RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Depression  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1603301DCHS2dachsous cadherin-related 24154231742154491799Human

Position Markers

Peak: (rs2130709)
Human AssemblyChrPosition (strand)Source
GRCh384154,367,038 - 154,367,039RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
596973478GWAS1092997_Hdisease recurrence, bipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder QTL GWAS1092997 (human)0.00001disease recurrence, bipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder4154367038154367039Human
406912825GWAS561801_Hunipolar depression, bipolar disorder, schizophrenia QTL GWAS561801 (human)0.000001unipolar depression, bipolar disorder, schizophrenia4154367038154367039Human
597247779GWAS1343853_Hbipolar disorder, schizophrenia, major depressive disorder QTL GWAS1343853 (human)0.000001bipolar disorder, schizophrenia, major depressive disorder4154367038154367039Human
406912763GWAS561739_Hdisease recurrence, unipolar depression, bipolar disorder, schizophrenia, sex interaction measurement QTL GWAS561739 (human)0.00001disease recurrence, unipolar depression, bipolar disorder, schizophrenia, sex interaction measurement4154367038154367039Human
596973614GWAS1093133_Hbipolar disorder, schizophrenia, major depressive disorder QTL GWAS1093133 (human)0.000001bipolar disorder, schizophrenia, major depressive disorder4154367038154367039Human
596974153GWAS1093672_Hbipolar disorder, schizophrenia, major depressive disorder QTL GWAS1093672 (human)0.000006bipolar disorder, schizophrenia, major depressive disorder4154367038154367039Human
406913358GWAS562334_Hunipolar depression, bipolar disorder, schizophrenia QTL GWAS562334 (human)0.000006unipolar depression, bipolar disorder, schizophrenia4154367038154367039Human
597252662GWAS1348736_Hbipolar disorder, schizophrenia, major depressive disorder QTL GWAS1348736 (human)0.000006bipolar disorder, schizophrenia, major depressive disorder4154367038154367039Human
597247590GWAS1343664_Hdisease recurrence, bipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder QTL GWAS1343664 (human)0.00001disease recurrence, bipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder4154367038154367039Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1343664_H GCST012295 Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction 31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls A 0.6005 0.00001 5 rs2130709 0.2197 disease recurrence (EFO:0004952)
sex interaction measurement (EFO:0008343)
 PMID:34099189
GWAS1343853_H GCST012294 Schizophrenia, bipolar disorder or recurrent major depressive disorder 11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 3,833 European ancestry recurrent major depressive disorder female cases, 1,481 recurrent major depressive disorder male cases, 38,937 European ancestry female controls, 29,714 European ancestry male controls A 0.6005 0.000001 6 rs2130709 0.184 PMID:34099189
GWAS1348736_H GCST012300 Schizophrenia, bipolar disorder or major depressive disorder 11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls A NR 0.000006 5.222 rs2130709 0.1655 PMID:34099189
Database Acc Id Source(s)
GWAS Catalog GCST012294 GWAS Catalog

RGD Curation Notes
Note Type Note Reference