GWAS558747_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS558747_H (bipolar disorder, body mass index QTL GWAS558747 (human)) Homo sapiens

Symbol: GWAS558747_H
Name: bipolar disorder, body mass index QTL GWAS558747 (human)
RGD ID: 406909771
Trait: bipolar disorder, body mass index
Measurement Type: body mass index (BMI)   (CMO:0000105)    
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381523,402,602 - 23,402,603RGD_MAPPER_PIPELINEGRCh38
GRCh371523,647,749 - 23,647,750RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS558747_HHumanbody mass index (BMI)  IAGPrs183418565405850206Based on the EFO term IDGWAS_CATALOGPMID:24322204

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS558747_HHumanbipolar disorder  IAGPrs183418565405850206 GWAS_CATALOGPMID:24322204
GWAS558747_HHumanbody mass index  IAGPrs183418565405850206 GWAS_CATALOGPMID:24322204
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs183418565)
Human AssemblyChrPosition (strand)Source
GRCh381523,402,602 - 23,402,603RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
406909771GWAS558747_Hbipolar disorder, body mass index QTL GWAS558747 (human)0.000002bipolar disorder, body mass indexbody mass index (BMI) (CMO:0000105)152340260223402603Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS558747_H GCST002306 Bipolar disorder (body mass index interaction) 388 European ancestry cases, 1,020 European ancestry controls ? NR 0.000002 5.699 rs183418565 N/A body mass index (EFO:0004340)
 PMID:24322204
Database Acc Id Source(s)
GWAS Catalog GCST002306 GWAS Catalog

RGD Curation Notes
Note Type Note Reference