GWAS551472_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS551472_H (COVID-19 QTL GWAS551472 (human)) Homo sapiens

Symbol: GWAS551472_H
Name: COVID-19 QTL GWAS551472 (human)
RGD ID: 406902496
Trait: COVID-19
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386161,312,812 - 161,312,813RGD_MAPPER_PIPELINEGRCh38
GRCh376161,733,844 - 161,733,845RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS551472_HHumanCOVID-19  IAGPrs11754506405850206 GWAS_CATALOGPMID:35224516
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs11754506)
Human AssemblyChrPosition (strand)Source
GRCh386161,312,812 - 161,312,813RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406902496GWAS551472_HCOVID-19 QTL GWAS551472 (human)0.000002COVID-196161312812161312813Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS551472_H GCST90104736 COVID-19 (hospitalized vs population) 1,703 European ancestry male cases, 208,248 European ancestry male controls, 214 South Asian, African or unknown ancestry male cases, 12,926 South Asian, African or unknown ancestry male controls T 0.36468018 0.000002 5.699 rs11754506 0.16224 PMID:35224516
Database Acc Id Source(s)
GWAS Catalog GCST90104736 GWAS Catalog

RGD Curation Notes
Note Type Note Reference