GWAS550793_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS550793_H (COVID-19 QTL GWAS550793 (human)) Homo sapiens

Symbol: GWAS550793_H
Name: COVID-19 QTL GWAS550793 (human)
RGD ID: 406901817
Trait: COVID-19
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386161,295,827 - 161,295,828RGD_MAPPER_PIPELINEGRCh38
GRCh376161,716,859 - 161,716,860RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS550793_HHumanCOVID-19  IAGPrs78229704405850206 GWAS_CATALOGPMID:35224516
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs78229704)
Human AssemblyChrPosition (strand)Source
GRCh386161,295,827 - 161,295,828RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406901089GWAS550065_HCOVID-19, mortality QTL GWAS550065 (human)0.000005COVID-19, mortalityratio of deaths to total study population during a period of time (CMO:0001023)6161295827161295828Human
406902116GWAS551092_HCOVID-19 QTL GWAS551092 (human)0.000004COVID-196161295827161295828Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
406904166GWAS553142_HCOVID-19, mortality QTL GWAS553142 (human)0.000008COVID-19, mortalityratio of deaths to total study population during a period of time (CMO:0001023)6161295827161295828Human
406902248GWAS551224_HCOVID-19 QTL GWAS551224 (human)0.000006COVID-196161295827161295828Human
406901817GWAS550793_HCOVID-19 QTL GWAS550793 (human)0.000007COVID-196161295827161295828Human
406901325GWAS550301_HCOVID-19 QTL GWAS550301 (human)0.00001COVID-196161295827161295828Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human
406902015GWAS550991_HCOVID-19, mortality QTL GWAS550991 (human)0.000009COVID-19, mortalityratio of deaths to total study population during a period of time (CMO:0001023)6161295827161295828Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS550065_H GCST90104773 COVID-19 death (death vs population) 1,001 European ancestry cases, 458,249 European ancestry controls, 103 cases, 27,967 controls G 0.02359484 0.000005 5.302 rs78229704 0.76199 mortality (EFO:0004352)
 PMID:35224516
GWAS550301_H GCST90104770 COVID-19 (severe vs non-severe with positive test) 1,120 European ancestry cases, 14,695 European ancestry controls G 0.0239295 0.00001 5 rs78229704 0.79409 PMID:35224516
GWAS550793_H GCST90104764 COVID-19 (severe vs tested, not severe) 1,120 European ancestry cases, 79,439 European ancestry controls G 0.02419523 0.000007 5.155 rs78229704 0.72783 PMID:35224516
GWAS550991_H GCST90104776 COVID-19 death (death vs tested and survived) 1,001 European ancestry cases, 79,558 European ancestry controls G 0.02419523 0.000009 5.046 rs78229704 0.75637 mortality (EFO:0004352)
 PMID:35224516
GWAS551092_H GCST90104761 COVID-19 (severe vs tested, not severe) 1,120 European ancestry cases, 79,439 European ancestry controls, 124 cases, 5,303 controls G 0.02319837 0.000004 5.398 rs78229704 0.7433 PMID:35224516
GWAS551224_H GCST90104758 COVID-19 (severe vs population) 1,120 European ancestry cases, 458,130 European ancestry controls G 0.02454213 0.000006 5.222 rs78229704 0.73134 PMID:35224516
None Available GCST90104767 COVID-19 (severe vs non-severe with positive test) 1,120 European ancestry cases, 14,695 European ancestry controls, 124 cases, 1,718 controls G 0.02205302 0.000007 5.155 rs78229704 0.80136 PMID:35224516
None Available GCST90104755 COVID-19 (severe vs population) 1,120 European ancestry cases, 458,130 European ancestry controls, 124 cases, 27,946 controls G 0.02359484 0.000004 5.398 rs78229704 0.73218 PMID:35224516
None Available GCST90104775 COVID-19 death (death vs tested and survived) 1,001 European ancestry cases, 79,558 European ancestry controls, 103 cases, 5,324 controls G 0.02319837 0.000005 5.302 rs78229704 0.77444 mortality (EFO:0004352)
 PMID:35224516
GWAS553142_H GCST90104774 COVID-19 death (death vs population) 1,001 European ancestry cases, 458,249 European ancestry controls G 0.02454213 0.000008 5.097 rs78229704 0.75896 mortality (EFO:0004352)
 PMID:35224516
Database Acc Id Source(s)
GWAS Catalog GCST90104764 GWAS Catalog
  GCST90104767 GWAS Catalog

RGD Curation Notes
Note Type Note Reference