GWAS549569_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS549569_H (atrial fibrillation QTL GWAS549569 (human)) Homo sapiens

Symbol: GWAS549569_H
Name: atrial fibrillation QTL GWAS549569 (human)
RGD ID: 406900593
Trait: atrial fibrillation
LOD Score: Not Available
P Value: 2.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381630,608,424 - 30,608,425RGD_MAPPER_PIPELINEGRCh38
GRCh371630,619,745 - 30,619,746RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1603925ZNF689zinc finger protein 689163060255830610775Human

Position Markers

Peak: (rs1055894680)
Human AssemblyChrPosition (strand)Source
GRCh381630,608,424 - 30,608,425RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406900593GWAS549569_Hatrial fibrillation QTL GWAS549569 (human)2e-14atrial fibrillation163060842430608425Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS549569_H GCST90244768 Atrial fibrillation 9,826 Japanese ancestry cases, 140,446 Japanese ancestry controls ? NR 2E-14 13.699 rs1055894680 1.21488 atrial fibrillation (EFO:0000275)
 PMID:36653681
Database Acc Id Source(s)
GWAS Catalog GCST90244768 GWAS Catalog

RGD Curation Notes
Note Type Note Reference