GWAS546020_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS546020_H (smoking initiation QTL GWAS546020 (human)) Homo sapiens

Symbol: GWAS546020_H
Name: smoking initiation QTL GWAS546020 (human)
RGD ID: 406897044
Trait: smoking initiation
LOD Score: Not Available
P Value: 3.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386166,042,608 - 166,042,609RGD_MAPPER_PIPELINEGRCh38
GRCh376166,456,096 - 166,456,097RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS546020_HHumansmoking initiation  IAGPrs777574405850206 GWAS_CATALOGPMID:36477530
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38605330LOC105378117uncharacterized LOC1053781176166025363166042646Human

Position Markers

Peak: (rs777574)
Human AssemblyChrPosition (strand)Source
GRCh386166,042,608 - 166,042,609RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406897044GWAS546020_Hsmoking initiation QTL GWAS546020 (human)3e-12smoking initiation6166042608166042609Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
406973164GWAS622140_Hsmoking initiation QTL GWAS622140 (human)7e-12smoking initiation6166042608166042609Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS546020_H GCST90243968 Smoking initiation 2,669,029 European ancestry individuals A 0.806 3E-12 11.523 rs777574 0.00764 smoking initiation (EFO:0005670)
 PMID:36477530
GWAS622140_H GCST90243985 Smoking initiation 3,382,012 European ancestry, East Asian ancestry, Hispanic or Latin American, African ancestry individuals A 0.822 7E-12 11.155 rs777574 0.00689 smoking initiation (EFO:0005670)
 PMID:36477530
Database Acc Id Source(s)
GWAS Catalog GCST90243968 GWAS Catalog

RGD Curation Notes
Note Type Note Reference