GWAS545151_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS545151_H (smoking initiation QTL GWAS545151 (human)) Homo sapiens

Symbol: GWAS545151_H
Name: smoking initiation QTL GWAS545151 (human)
RGD ID: 406896175
Trait: smoking initiation
LOD Score: Not Available
P Value: 1.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh384172,599,400 - 172,599,401RGD_MAPPER_PIPELINEGRCh38
GRCh374173,520,551 - 173,520,552RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS545151_HHumansmoking initiation  IAGPrs6831785405850206 GWAS_CATALOGPMID:36477530
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2301498GALNTL6polypeptide N-acetylgalactosaminyltransferase like 64171813404173041559Human

Position Markers

Peak: (rs6831785)
Human AssemblyChrPosition (strand)Source
GRCh384172,599,400 - 172,599,401RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406896175GWAS545151_Hsmoking initiation QTL GWAS545151 (human)1e-14smoking initiation4172599400172599401Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS545151_H GCST90243968 Smoking initiation 2,669,029 European ancestry individuals T 0.546 1E-14 14 rs6831785 0.0067 smoking initiation (EFO:0005670)
 PMID:36477530
Database Acc Id Source(s)
GWAS Catalog GCST90243968 GWAS Catalog

RGD Curation Notes
Note Type Note Reference