GWAS536952_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS536952_H (intelligence QTL GWAS536952 (human)) Homo sapiens

Symbol: GWAS536952_H
Name: intelligence QTL GWAS536952 (human)
RGD ID: 406887976
Trait: intelligence
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382049,061,486 - 49,061,487RGD_MAPPER_PIPELINEGRCh38
GRCh372047,678,023 - 47,678,024RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS536952_HHumanintelligence  IAGPrs113315451405850206 GWAS_CATALOGPMID:28530673
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1316788CSE1Lchromosome segregation 1 like204904631249096949Human

Position Markers

Peak: (rs113315451)
Human AssemblyChrPosition (strand)Source
GRCh382049,061,486 - 49,061,487RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2292864PRSTS43_HProstate tumor susceptibility QTL 43 (human)0.620.05Prostate tumor susceptibility204730303964444167Human
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
406887976GWAS536952_Hintelligence QTL GWAS536952 (human)1e-08intelligence204906148649061487Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS536952_H GCST004364 Intelligence up to 58,799 European ancestry adults, up to 19,509 European ancestry children A 0.4254 1E-8 8 rs113315451 5.707 intelligence (EFO:0004337)
 PMID:28530673
None Available GCST004364 Intelligence up to 58,799 European ancestry adults, up to 19,509 European ancestry children A 0.4254 1E-8 8 rs113315451 5.707 intelligence (EFO:0004337)
 PMID:28530673
Database Acc Id Source(s)
GWAS Catalog GCST004364 GWAS Catalog

RGD Curation Notes
Note Type Note Reference