| 631273 | Lecl2 | Lens clarity QTL 2 | | 0.001 | lens clarity trait (VT:0001304) | age of onset/diagnosis of cataract (CMO:0001584) | 15 | 10596089 | 55596089 | Rat |
| 2300167 | Bmd63 | Bone mineral density QTL 63 | 5.9 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 15 | 11111142 | 56111142 | Rat |
| 1331729 | Rf42 | Renal function QTL 42 | 3.071 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal blood flow rate (CMO:0001168) | 15 | 17362897 | 73690657 | Rat |
| 1641887 | Alcrsp14 | Alcohol response QTL 14 | | | response to alcohol trait (VT:0010489) | brain neurotensin receptor 1 density (CMO:0002068) | 15 | 1 | 42356671 | Rat |
| 731170 | Pur3 | Proteinuria QTL 3 | 2.3 | 0.0005 | urine protein amount (VT:0005160) | urine protein excretion rate (CMO:0000759) | 15 | 1 | 41686771 | Rat |
| 738017 | Hcas7 | Hepatocarcinoma susceptibility QTL 7 | 2.91 | | liver integrity trait (VT:0010547) | liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464) | 15 | 2266368 | 46921453 | Rat |
| 10755503 | Bp391 | Blood pressure QTL 391 | 2.37 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 15 | 20248600 | 37896129 | Rat |
| 10054130 | Srcrt8 | Stress Responsive Cort QTL 8 | 2.18 | 0.0085 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 15 | 22117933 | 67117933 | Rat |
| 2300173 | Bmd62 | Bone mineral density QTL 62 | 12.8 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 15 | 11111142 | 56111142 | Rat |
| 9589149 | Insul29 | Insulin level QTL 29 | 9.06 | 0.001 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 15 | 1 | 34723002 | Rat |
| 2324620 | Coatc3 | Coat color QTL 3 | | | coat/hair pigmentation trait (VT:0010463) | pigmented coat/hair area to total coat/hair area ratio (CMO:0001810) | 15 | 19856566 | 46187442 | Rat |
| 61424 | Scl1 | Serum cholesterol level QTL 1 | 7.7 | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 15 | 16725528 | 80672115 | Rat |
| 10401805 | Kidm51 | Kidney mass QTL 51 | | | kidney mass (VT:0002707) | both kidneys wet weight (CMO:0000085) | 15 | 306329 | 45306329 | Rat |
| 1582251 | Gluco24 | Glucose level QTL 24 | 3.2 | 0.0008 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 15 | 5530756 | 50530756 | Rat |
| 1354657 | Despr13 | Despair related QTL 13 | | 0.0022 | locomotor behavior trait (VT:0001392) | amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) | 15 | 1 | 29912054 | Rat |
| 2317750 | Glom26 | Glomerulus QTL 26 | 4.3 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 15 | 12496141 | 65205939 | Rat |
| 2298549 | Neuinf12 | Neuroinflammation QTL 12 | 3.5 | | nervous system integrity trait (VT:0010566) | spinal cord beta-2 microglobulin mRNA level (CMO:0002125) | 15 | 1 | 55302115 | Rat |
| 631550 | Bw7 | Body weight QTL 7 | 3.6 | | body mass (VT:0001259) | body weight (CMO:0000012) | 15 | 19856566 | 34924750 | Rat |
| 8552920 | Pigfal8 | Plasma insulin-like growth factor 1 level QTL 8 | 3 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 15 | 1 | 34723002 | Rat |
| 2293688 | Bss29 | Bone structure and strength QTL 29 | 5.31 | 0.0001 | femur morphology trait (VT:0000559) | femur midshaft cortical cross-sectional area (CMO:0001663) | 15 | 11111142 | 56111142 | Rat |
| 5685002 | Bss103 | Bone structure and strength QTL 103 | 2.8 | | tibia strength trait (VT:1000284) | tibia total energy absorbed before break (CMO:0001736) | 15 | 14481165 | 28469888 | Rat |
| 8694361 | Abfw6 | Abdominal fat weight QTL 6 | 10.2 | 0.001 | visceral adipose mass (VT:0010063) | abdominal fat pad weight to body weight ratio (CMO:0000095) | 15 | 1 | 34723002 | Rat |
