SHGC-25089 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-25089

Symbol: SHGC-25089
Previously known as: SHGC-51688; 
RGD ID: 2150738
Expected Size: 109 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374185,332,544 - 185,332,652UniSTSGRCh37
Build 364185,569,538 - 185,569,646RGDNCBI36
Celera4182,661,206 - 182,661,314RGD
Cytogenetic Map4q34.1-q35.1UniSTS
HuRef4181,086,800 - 181,086,908UniSTS
TNG Radiation Hybrid Map4109527.0UniSTS
Is Marker For: Genes:   IRF2  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GCACTGACCACTTCTATAATGGC
Reverse Primer GACAGGGTTTCTTTTGAAGTGG
 

Region

Nucleotide Sequences
GenBank Nucleotide AC099343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001612.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G31584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G34163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL295583.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976326.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 3660 UniSTS
UniSTS SHGC-25089 UniSTS SSLP Pipeline