SHGC-59549 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-59549

Symbol: SHGC-59549
Previously known as: M32639; 
RGD ID: 2140091
Expected Size: 270 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37470,865,991 - 70,866,260UniSTSGRCh37
Build 36470,900,580 - 70,900,849RGDNCBI36
Celera468,219,419 - 68,219,688RGD
Cytogenetic Map4q13.3UniSTS
HuRef466,663,651 - 66,663,920UniSTS
GeneMap99-GB4 RH Map4413.97UniSTS
Is Marker For: Genes:   STATH  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CTTGATGTCCCAGTATGTTG
Reverse Primer GCCCACCTTTGAGTATTATG
 

Region

Nucleotide Sequences
GenBank Nucleotide AC063956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX649104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001612.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL297629.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976326.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 6779 UniSTS
UniSTS SHGC-59549 UniSTS SSLP Pipeline