1808 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: 1808

Symbol: 1808
Previously known as: 1807; D15S879E; GDB:581458; 
RGD ID: 2114896
Expected Size: 84 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371580,890,123 - 80,890,206UniSTSGRCh37
Build 361578,677,178 - 78,677,261RGDNCBI36
Celera1557,827,794 - 57,827,877RGD
Cytogenetic Map15q24UniSTS
HuRef1557,648,293 - 57,648,376UniSTS
GeneMap99-GB4 RH Map15283.73UniSTS
NCBI RH Map15541.8UniSTS
Is Marker For: Genes:   ARNT2  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CACAACCGACTTAATAACTG
Reverse Primer CTTATGGATGTGAACTGTGC
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_014862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB002305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC108450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC108451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX538026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001623.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL294140.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976389.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 9915 UniSTS
UniSTS 1808 UniSTS SSLP Pipeline