SHGC-61364 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-61364

Symbol: SHGC-61364
Previously known as: A008T06; 
RGD ID: 1854241
Expected Size: 256 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37162,580,338 - 2,580,595UniSTSGRCh37
Build 36162,520,339 - 2,520,596RGDNCBI36
Celera162,795,274 - 2,795,531RGD
Cytogenetic Map16p13.3UniSTS
HuRef162,506,410 - 2,506,667UniSTS
GeneMap99-GB4 RH Map1662.83UniSTS
Is Marker For: Genes:   AMDHD2   CEMP1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer ATTAGTGTCATCCTGCCAT
Reverse Primer CAGGACAGCACCTGTAAG
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_001048212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001145815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC093525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY584596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC146925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC146926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001624.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ037059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL303484.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583451.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976390.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 51005 UniSTS
  752014 UniSTS
UniSTS SHGC-61364 UniSTS SSLP Pipeline