ECD00702 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: ECD00702

Symbol: ECD00702
Previously known as:
RGD ID: 1799696
Expected Size: 894 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,133,467 - 27,134,360UniSTSGRCh37
Build 36727,099,992 - 27,100,885RGDNCBI36
Celera727,122,404 - 27,123,297RGD
Cytogenetic Map7p15.3UniSTS
HuRef727,014,058 - 27,014,951UniSTS
CRA_TCAGchr7v2727,184,620 - 27,185,513UniSTS
Is Marker For: Genes:   HOXA1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GTTTGCCCACCCTGTTTTAG
Reverse Primer TCACTACCAAGCAGCTCACG
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_005522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_153620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC004079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BL000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BL000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH236948.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001615.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G26757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL297858.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976334.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S79869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S79871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S79910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U37431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 3198 UniSTS
UniSTS ECD00702 UniSTS SSLP Pipeline