D6S1233E Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: D6S1233E

Symbol: D6S1233E
Previously known as: stSG6331; GDB:443598; 
RGD ID: 1688554
Expected Size: 120 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X54,592,676 - 54,592,795UniSTSGRCh37
GRCh371179,360,481 - 179,361,535UniSTSGRCh37
Build 36X54,609,401 - 54,609,520RGDNCBI36
CeleraX58,425,239 - 58,425,358RGD
Cytogenetic Map1q25.2UniSTS
Cytogenetic MapXp11.22UniSTS
HuRefX51,642,275 - 51,642,394UniSTS
Is Marker For: Genes:   GNL3L   AXDND1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TGATATGGTTTGGCTGTG
Reverse Primer ATGGAACCGACCTAAATG
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_001184819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK128277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL391139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL451075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001609.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001631.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583338.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976304.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976427.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 126859 UniSTS
  54552 UniSTS
UniSTS D6S1233E UniSTS SSLP Pipeline