SHGC4-824 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC4-824

Symbol: SHGC4-824
Previously known as: GDB:193572; 
RGD ID: 1675854
Expected Size: 208 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3741,732,996 - 1,733,203UniSTSGRCh37
Build 3641,702,794 - 1,703,001RGDNCBI36
Celera41,644,046 - 1,644,253RGD
Cytogenetic Map4p16.3UniSTS
HuRef41,675,892 - 1,676,099UniSTS
TNG Radiation Hybrid Map41021.0UniSTS
Is Marker For: Genes:   TACC3  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AACACTGACTAAGTTTTGACAAACC
Reverse Primer TGAAAGAGGAGAGCTTCAGAGAC
 

Region

Nucleotide Sequences
GenBank Nucleotide AC016773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001612.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL298389.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976321.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M63005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M63544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 10460 UniSTS
UniSTS SHGC4-824 UniSTS SSLP Pipeline