SHGC-35513 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

Marker: SHGC-35513

Symbol: SHGC-35513
Previously known as: SGC35513; STS_X16351; 
RGD ID: 1673683
Expected Size: 127 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37177,536,558 - 7,536,684UniSTSGRCh37
Build 36177,477,283 - 7,477,409RGDNCBI36
Celera177,562,975 - 7,563,101RGD
Cytogenetic Map17p13-p12UniSTS
HuRef177,430,564 - 7,430,690UniSTS
Stanford-G3 RH Map17451.0UniSTS
Whitehead-RH Map1764.1UniSTS
NCBI RH Map17205.1UniSTS
GeneMap99-G3 RH Map17451.0UniSTS
Is Marker For: Genes:   SHBG  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TTTGGGCACAAGGTCAGAG
Reverse Primer TCTTAGGTGGAGCTTTAATGGG
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_001040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001146279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001146280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001146281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC007421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC101785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC112186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001625.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G26767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G29846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL308165.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583840.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976395.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M31651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X05403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X05792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X05885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X16349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X16351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 6462 UniSTS