SHGC-12905 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-12905

Symbol: SHGC-12905
Previously known as: WI-7908; ARL3; UTR-04745; GDB:677731; G00-677-731; 
RGD ID: 1653072
Expected Size: 0 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710104,436,323 - 104,436,650UniSTSGRCh37
Build 3610104,426,313 - 104,426,640RGDNCBI36
Celera1098,177,405 - 98,177,732RGD
Cytogenetic Map10q23.3UniSTS
HuRef1098,070,951 - 98,071,278UniSTS
Stanford-G3 RH Map104669.0UniSTS
GeneMap99-G3 RH Map104905.0UniSTS
Is Marker For: Genes:   ARL3  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AATCTAGACGAATGGAGATGCA
Reverse Primer GCCCACTGGAATTGTCTAAA
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_004311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL391121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001618.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G06754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL298168.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976373.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U07151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 403 UniSTS
UniSTS SHGC-12905 UniSTS SSLP Pipeline