D10S548 Marker Search Result - Rat Genome Database

Symbol:

D10S548

Previously known as:

AFM220xd4; 220XD4; stSG943; HS220XD4; GDB:199340; SHGC-2012;

RGD ID:

1339504

Expected Size:

150 (bp)

Position

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	10	18,721,292 - 18,721,437	UniSTS	GRCh37
GRCh37	10	18,721,280 - 18,721,431	UniSTS	GRCh37
GRCh37	10	18,721,280 - 18,721,323	UniSTS	GRCh37
Build 36	10	18,761,298 - 18,761,443	RGD	NCBI36
Celera	10	18,408,158 - 18,408,307	UniSTS
Celera	10	18,408,158 - 18,408,201	UniSTS
Celera	10	18,408,170 - 18,408,313	RGD
Cytogenetic Map	10	p12	UniSTS
Cytogenetic Map	10	p14-p12	UniSTS
HuRef	10	18,385,994 - 18,386,139	UniSTS
HuRef	10	18,386,006 - 18,386,145	UniSTS
HuRef	10	18,385,994 - 18,386,037	UniSTS
Marshfield Genetic Map	10	45.7	UniSTS
Marshfield Genetic Map	10	45.7	RGD
Genethon Genetic Map	10	43.4	UniSTS
TNG Radiation Hybrid Map	10	9800.0	UniSTS
deCODE Assembly Map	10	43.4	UniSTS
Stanford-G3 RH Map	10	863.0	UniSTS
GeneMap99-GB4 RH Map	10	119.58	UniSTS
Whitehead-RH Map	10	124.9	UniSTS
Whitehead-YAC Contig Map	10		UniSTS
NCBI RH Map	10	249.3	UniSTS
GeneMap99-G3 RH Map	10	863.0	UniSTS

Is Marker For:

QTLs: FBRL4_H FBRL5_H BW73_H BW286_H
Genes: CACNB2

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Comprehensive human genetic maps: individual and sex-specific variation in recombination.	Broman KW, etal., Am J Hum Genet 1998 Sep;63(3):861-9.
2.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence


Forward Primer	CAGTAGTATTGAGGTATAGGGACAG
Reverse Primer	TTGGTTGTGGTAATGGTTTC

Region

Nucleotide Sequences


GenBank Nucleotide	AL139814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH003457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH003505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM001618.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DS486039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DS990677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GL000093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GL582984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JH976367.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Z23664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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