D4Wox27 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

Marker: D4Wox27

Symbol: D4Wox27
Previously known as: oxsts4983; D3Wox11; RATILG6; IL6; R88; 
RGD ID: 10800
Expected Size: 98 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.245,218,294 - 5,218,392 (-)MAPPERmRatBN7.2
Rnor_6.043,044,017 - 3,044,114NCBIRnor6.0
Rnor_5.043,096,322 - 3,096,419UniSTSRnor5.0
RGSC_v3.44460,493 - 460,590UniSTSRGSC3.4
RGSC_v3.14460,492 - 460,590RGD
Celera45,094,379 - 5,094,476UniSTS
Cytogenetic Map4q11UniSTS
Is Marker For: Strains:   SHR.WKY-(D4Wox27-D4Rat15)/Tkyo   SHR.WKY-(D4Wox27-D4Rat11)/IzmTkyo   SHR.WKY-(D4Wox27-D4Rat10)/IzmTkyo   SHR.WKY-(D4Wox27-D4Rat4)/IzmTkyo  
QTLs:   Gluco12   Stl19   Stl22  
Genes:   Il6  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. UniSTS Pipeline RGD automated pipelines
3. Electronic Submission of SSLP Data Sets Wilder R. Oct.2000. National Institute of Arthritis and Musculoskeletal and Skin Diseases, ARB Rat Genetic Database

Strains and Sequence

Sequence
 
Forward Primer AAGTGCTTTTTGGCTGAATG
Reverse Primer TATGCATCTTAGCTGGGCTG
 

Region

Nucleotide Sequences
GenBank Nucleotide JH614447.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M26745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

RGD Curation Notes
Note Type Note Reference
Database Acc Id Source(s)
NCBI Gene 100303310 UniSTS
  24498 UniSTS
  554296 UniSTS
  554298 UniSTS
NCBI Nucleotide M26745