LOC102552344 (uncharacterized LOC102552344) - Rat Genome Database

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Gene: LOC102552344 (uncharacterized LOC102552344) Rattus norvegicus
Analyze
Symbol: LOC102552344
Name: uncharacterized LOC102552344
RGD ID: 7524474
Description:
Type: ncrna (Ensembl: lincRNA)
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8159,806,263 - 9,813,463 (+)NCBIGRCr8
mRatBN7.2157,374,155 - 7,382,660 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0158,061,870 - 8,067,661 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl158,061,926 - 8,067,880 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01512,124,494 - 12,130,717 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera157,432,537 - 7,438,326 (+)NCBICelera
Cytogenetic Map15p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102552344
51 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15105825014481294Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 3 52 19 24 5 21 5 4 65 36 44 7 30 19

Sequence


Ensembl Acc Id: ENSRNOT00000081917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl158,061,926 - 8,067,880 (+)Ensembl
RefSeq Acc Id: XR_005493833
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8159,806,263 - 9,813,463 (+)NCBI
mRatBN7.2157,374,155 - 7,382,660 (+)NCBI
RefSeq Acc Id: XR_359812
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8159,806,263 - 9,813,463 (+)NCBI
mRatBN7.2157,374,157 - 7,382,660 (+)NCBI
Rnor_6.0158,061,870 - 8,067,661 (+)NCBI
Rnor_5.01512,124,494 - 12,130,717 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-14464 BioCyc
Ensembl Genes ENSRNOG00000053848 Ensembl
NCBI Gene LOC102552344 ENTREZGENE
PhenoGen LOC102552344 PhenoGen
RatGTEx ENSRNOG00000053848 RatGTEx
RNAcentral URS0000CD02A0 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-17 LOC102552344  uncharacterized LOC102552344      Symbol and Name status set to provisional 70820 PROVISIONAL