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Gene: Arhgap4 (Rho GTPase activating protein 4) Rattus norvegicus

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Symbol:

Arhgap4

Name:

Rho GTPase activating protein 4

RGD ID:

628901

Description:

Enables GTPase activator activity. Involved in negative regulation of axon extension; negative regulation of fibroblast migration; and nervous system development. Located in growth cone and microtubule. Orthologous to human ARHGAP4 (Rho GTPase activating protein 4); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

rho GTPase-activating protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	156,787,566 - 156,802,841 (-)	NCBI		GRCr8
mRatBN7.2	X	151,636,071 - 151,651,528 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	151,632,454 - 151,651,128 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	153,777,408 - 153,792,281 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	157,340,624 - 157,355,497 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	155,012,457 - 155,027,330 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	156,873,094 - 156,888,762 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	156,873,849 - 156,888,761 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	152,621,929 - 152,636,830 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	159,824,136 - 159,839,008 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	159,895,781 - 159,914,456 (-)	NCBI
Celera	1	136,240,986 - 136,255,858 (+)	NCBI		Celera
Cytogenetic Map	X	q37	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Arhgap4	Rat	adrenoleukodystrophy		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Adrenoleukodystrophy	ClinVar	PMID:10480214 more ...
Arhgap4	Rat	autistic disorder		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autism	ClinVar	PMID:21681106 and PMID:30208311
Arhgap4	Rat	autosomal hemophilia A		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: AUTOSOMAL HEMOPHILIA A	ClinVar	PMID:31690835
Arhgap4	Rat	Barth syndrome		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: 3-Methylglutaconic aciduria type 2	ClinVar	PMID:10480214 more ...
Arhgap4	Rat	cerebral creatine deficiency syndrome 1		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Creatine transporter deficiency	ClinVar	PMID:10480214 more ...
Arhgap4	Rat	Chromosome Xq28 Duplication Syndrome		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Chromosome Xq28 duplication syndrome	ClinVar
Arhgap4	Rat	dyskeratosis congenita		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Dyskeratosis congenita	ClinVar	PMID:10480214 more ...
Arhgap4	Rat	Emery-Dreifuss muscular dystrophy		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: X-linked Emery-Dreifuss muscular dystrophy	ClinVar	PMID:10480214 more ...
Arhgap4	Rat	Emery-Dreifuss muscular dystrophy		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:10480214 more ...
Arhgap4	Rat	factor VIII deficiency		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Factor 8 deficiency and congenital	ClinVar	PMID:31690835
Arhgap4	Rat	favism		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Anemia more ...	ClinVar	PMID:10480214 more ...
Arhgap4	Rat	immunodeficiency 33		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Immunodeficiency 33	ClinVar	PMID:25741868
Arhgap4	Rat	paraplegia		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Spastic paraplegia	ClinVar	PMID:10480214 more ...
Arhgap4	Rat	periventricular nodular heterotopia		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Heterotopia more ...	ClinVar	PMID:10480214 more ...
Arhgap4	Rat	severe congenital encephalopathy due to MECP2 mutation		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Severe neonatal-onset encephalopathy with microcephaly	ClinVar	PMID:12180070 more ...
Arhgap4	Rat	Splenomegaly		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Splenomegaly	ClinVar	PMID:25741868
Arhgap4	Rat	syndromic X-linked intellectual disability Lubs type		ISO	ARHGAP4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Syndromic X-linked intellectual disability Lubs type	ClinVar	PMID:22679399 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Arhgap4	Rat	human immunodeficiency virus infectious disease		ISO	ARHGAP4 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:15308739

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Arhgap4	Rat	(+)-catechin	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	Catechin results in decreased expression of ARHGAP4 mRNA	CTD	PMID:15465739
Arhgap4	Rat	1,2-dimethylhydrazine	increases expression	ISO	Arhgap4 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in increased expression of ARHGAP4 mRNA	CTD	PMID:22206623
Arhgap4	Rat	17beta-estradiol	multiple interactions	EXP		6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of ARHGAP4 mRNA	CTD	PMID:32741896
Arhgap4	Rat	17beta-estradiol 3-benzoate	multiple interactions	EXP		6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of ARHGAP4 mRNA	CTD	PMID:32741896
Arhgap4	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Arhgap4 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of ARHGAP4 mRNA	CTD	PMID:21570461
Arhgap4	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of ARHGAP4 mRNA	CTD	PMID:34747641
Arhgap4	Rat	2,4,6-tribromophenol	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	2 more ...	CTD	PMID:31675489
Arhgap4	Rat	3,3',5,5'-tetrabromobisphenol A	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	tetrabromobisphenol A results in decreased expression of ARHGAP4 protein	CTD	PMID:31675489
Arhgap4	Rat	4,4'-sulfonyldiphenol	increases methylation	ISO	Arhgap4 (Mus musculus)	6480464	bisphenol S results in increased methylation of ARHGAP4 exon	CTD	PMID:33297965
Arhgap4	Rat	4,4'-sulfonyldiphenol	affects methylation	ISO	Arhgap4 (Mus musculus)	6480464	bisphenol S affects the methylation of ARHGAP4 gene	CTD	PMID:31683443
Arhgap4	Rat	acetamide	increases expression	EXP		6480464	acetamide results in increased expression of ARHGAP4 mRNA	CTD	PMID:31881176
Arhgap4	Rat	acrylamide	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	Acrylamide results in decreased expression of ARHGAP4 mRNA	CTD	PMID:32763439
Arhgap4	Rat	aflatoxin B1	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased expression of ARHGAP4 mRNA	CTD	PMID:22100608
Arhgap4	Rat	aflatoxin B1	increases methylation	ISO	ARHGAP4 (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of ARHGAP4 intron	CTD	PMID:30157460
Arhgap4	Rat	all-trans-retinoic acid	increases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	Tretinoin results in increased expression of ARHGAP4 mRNA	CTD	PMID:15498508
Arhgap4	Rat	alpha-Zearalanol	increases expression	EXP		6480464	Zeranol results in increased expression of ARHGAP4 mRNA	CTD	PMID:35163327
Arhgap4	Rat	amiodarone	increases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	Amiodarone results in increased expression of ARHGAP4 mRNA	CTD	PMID:19774075
Arhgap4	Rat	ammonium chloride	affects expression	EXP		6480464	Ammonium Chloride affects the expression of ARHGAP4 mRNA	CTD	PMID:16483693
Arhgap4	Rat	aristolochic acid A	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of ARHGAP4 mRNA and aristolochic acid I results in decreased expression of ARHGAP4 protein	CTD	PMID:33212167
Arhgap4	Rat	benzo[a]pyrene	decreases expression	ISO	Arhgap4 (Mus musculus)	6480464	Benzo(a)pyrene results in decreased expression of ARHGAP4 mRNA	CTD	PMID:21569818
Arhgap4	Rat	benzo[a]pyrene	increases methylation	ISO	ARHGAP4 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of ARHGAP4 exon	CTD	PMID:27901495
Arhgap4	Rat	benzo[a]pyrene	affects methylation	ISO	ARHGAP4 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of ARHGAP4 promoter	CTD	PMID:27901495
Arhgap4	Rat	beta-lapachone	increases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	beta-lapachone results in increased expression of ARHGAP4 mRNA	CTD	PMID:38218311
Arhgap4	Rat	beta-lapachone	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	beta-lapachone results in decreased expression of ARHGAP4 mRNA	CTD	PMID:38218311
Arhgap4	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of ARHGAP4 mRNA	CTD	PMID:25181051 more ...
Arhgap4	Rat	bisphenol A	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	bisphenol A results in decreased expression of ARHGAP4 protein	CTD	PMID:31675489
Arhgap4	Rat	bisphenol A	increases expression	ISO	Arhgap4 (Mus musculus)	6480464	bisphenol A results in increased expression of ARHGAP4 mRNA	CTD	PMID:38701888
Arhgap4	Rat	bisphenol F	decreases expression	ISO	Arhgap4 (Mus musculus)	6480464	bisphenol F results in decreased expression of ARHGAP4 mRNA	CTD	PMID:38685157
Arhgap4	Rat	buta-1,3-diene	decreases expression	ISO	Arhgap4 (Mus musculus)	6480464	1 and 3-butadiene results in decreased expression of ARHGAP4 mRNA	CTD	PMID:29038090
Arhgap4	Rat	calcitriol	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	Calcitriol results in decreased expression of ARHGAP4 mRNA	CTD	PMID:26485663
Arhgap4	Rat	carbon nanotube	decreases expression	ISO	Arhgap4 (Mus musculus)	6480464	Nanotubes more ...	CTD	PMID:25554681
Arhgap4	Rat	chloroprene	decreases expression	ISO	Arhgap4 (Mus musculus)	6480464	Chloroprene results in decreased expression of ARHGAP4 mRNA	CTD	PMID:23125180
Arhgap4	Rat	cisplatin	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	Cisplatin results in decreased expression of ARHGAP4 mRNA	CTD	PMID:27392435
Arhgap4	Rat	cisplatin	multiple interactions	ISO	ARHGAP4 (Homo sapiens)	6480464	[Cisplatin co-treated with jinfukang] results in decreased expression of ARHGAP4 mRNA	CTD	PMID:27392435
Arhgap4	Rat	Cuprizon	increases expression	EXP		6480464	Cuprizone results in increased expression of ARHGAP4 mRNA	CTD	PMID:27523638
Arhgap4	Rat	doxorubicin	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	Doxorubicin results in decreased expression of ARHGAP4 mRNA	CTD	PMID:29803840
Arhgap4	Rat	ethanol	increases expression	ISO	Arhgap4 (Mus musculus)	6480464	Ethanol results in increased expression of ARHGAP4 mRNA	CTD	PMID:30319688
Arhgap4	Rat	flavonoids	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	Flavonoids results in decreased expression of ARHGAP4 mRNA	CTD	PMID:15465739
Arhgap4	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of ARHGAP4 mRNA	CTD	PMID:22061828
Arhgap4	Rat	glycidol	increases expression	EXP		6480464	glycidol results in increased expression of ARHGAP4 mRNA	CTD	PMID:24915197
Arhgap4	Rat	ivermectin	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	Ivermectin results in decreased expression of ARHGAP4 protein	CTD	PMID:32959892
Arhgap4	Rat	nickel atom	increases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	Nickel results in increased expression of ARHGAP4 mRNA	CTD	PMID:25583101
Arhgap4	Rat	ozone	decreases expression	EXP		6480464	Ozone results in decreased expression of ARHGAP4 mRNA	CTD	PMID:28623178
Arhgap4	Rat	ozone	multiple interactions	ISO	ARHGAP4 (Homo sapiens)	6480464	[Air Pollutants results in increased abundance of Ozone] which affects the expression of ARHGAP4 mRNA	CTD	PMID:35430440
Arhgap4	Rat	ozone	multiple interactions	ISO	Arhgap4 (Mus musculus)	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased expression of ARHGAP4 mRNA	CTD	PMID:34911549
Arhgap4	Rat	perfluorohexanesulfonic acid	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	perfluorohexanesulfonic acid results in decreased expression of ARHGAP4 mRNA	CTD	PMID:25812627
Arhgap4	Rat	perfluorononanoic acid	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	perfluoro-n-nonanoic acid results in decreased expression of ARHGAP4 mRNA	CTD	PMID:25812627
Arhgap4	Rat	perfluorooctane-1-sulfonic acid	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	perfluorooctane sulfonic acid results in decreased expression of ARHGAP4 mRNA	CTD	PMID:25812627
Arhgap4	Rat	perfluorooctanoic acid	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	perfluorooctanoic acid results in decreased expression of ARHGAP4 mRNA	CTD	PMID:25812627
Arhgap4	Rat	silver atom	affects expression	ISO	Arhgap4 (Mus musculus)	6480464	Silver affects the expression of ARHGAP4 mRNA	CTD	PMID:27131904
Arhgap4	Rat	silver(0)	affects expression	ISO	Arhgap4 (Mus musculus)	6480464	Silver affects the expression of ARHGAP4 mRNA	CTD	PMID:27131904
Arhgap4	Rat	simvastatin	increases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	Simvastatin results in increased expression of ARHGAP4 mRNA	CTD	PMID:14630613
Arhgap4	Rat	sodium arsenite	increases expression	ISO	Arhgap4 (Mus musculus)	6480464	sodium arsenite results in increased expression of ARHGAP4 mRNA	CTD	PMID:36209798
Arhgap4	Rat	sunitinib	decreases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	Sunitinib results in decreased expression of ARHGAP4 mRNA	CTD	PMID:31533062
Arhgap4	Rat	tamibarotene	increases expression	ISO	ARHGAP4 (Homo sapiens)	6480464	tamibarotene results in increased expression of ARHGAP4 mRNA	CTD	PMID:15498508
Arhgap4	Rat	testosterone	multiple interactions	EXP		6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of ARHGAP4 mRNA	CTD	PMID:32741896
Arhgap4	Rat	tetraphene	increases expression	ISO	Arhgap4 (Mus musculus)	6480464	benz(a)anthracene results in increased expression of ARHGAP4 mRNA	CTD	PMID:26377693
Arhgap4	Rat	titanium dioxide	increases expression	ISO	Arhgap4 (Mus musculus)	6480464	titanium dioxide results in increased expression of ARHGAP4 mRNA	CTD	PMID:23557971 and PMID:35295148
Arhgap4	Rat	titanium dioxide	decreases expression	ISO	Arhgap4 (Mus musculus)	6480464	titanium dioxide results in decreased expression of ARHGAP4 mRNA	CTD	PMID:27760801
Arhgap4	Rat	triphenyl phosphate	affects expression	ISO	ARHGAP4 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of ARHGAP4 mRNA	CTD	PMID:37042841
Arhgap4	Rat	triptonide	increases expression	ISO	Arhgap4 (Mus musculus)	6480464	triptonide results in increased expression of ARHGAP4 mRNA	CTD	PMID:33045310
Arhgap4	Rat	valproic acid	increases methylation	ISO	ARHGAP4 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of ARHGAP4 gene	CTD	PMID:29154799
Arhgap4	Rat	vinclozolin	increases methylation	EXP		6480464	vinclozolin results in increased methylation of ARHGAP4 gene	CTD	PMID:31682807

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Arhgap4	Rat	negative regulation of axon extension		IMP		2313143		RGD
Arhgap4	Rat	negative regulation of cell migration	involved_in	IBA	PANTHER:PTN001021265 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Arhgap4	Rat	negative regulation of fibroblast migration		IMP		2313143		RGD
Arhgap4	Rat	nervous system development		IEP		632235		RGD
Arhgap4	Rat	regulation of Rho protein signal transduction		NAS		632235		RGD
Arhgap4	Rat	signal transduction	involved_in	IEA	InterPro:IPR000198	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Arhgap4	Rat	cytoplasm	located_in	IEA	UniProtKB:P98171 and ensembl:ENSP00000203786	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Arhgap4	Rat	cytoplasm	is_active_in	IBA	MGI:109605 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Arhgap4	Rat	cytoplasm	located_in	ISO	ARHGAP4 (Homo sapiens)	1624291		RGD	GO_REF:0000054
Arhgap4	Rat	cytosol	located_in	ISO	ARHGAP4 (Homo sapiens) more ...	1624291		RGD	GO_REF:0000052
Arhgap4	Rat	cytosol	located_in	IEA	UniProtKB:P98171 and ensembl:ENSP00000203786	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Arhgap4	Rat	growth cone		IDA		2313143		RGD
Arhgap4	Rat	microtubule	located_in	IDA		632235		RGD
Arhgap4	Rat	nucleoplasm	located_in	ISO	ARHGAP4 (Homo sapiens) more ...	1624291		RGD	GO_REF:0000052
Arhgap4	Rat	nucleoplasm	located_in	IEA	UniProtKB:P98171 and ensembl:ENSP00000203786	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Arhgap4	Rat	GTPase activator activity		IDA		632235		RGD
Arhgap4	Rat	GTPase activator activity	enables	IEA	UniProtKB-KW:KW-0343	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Arhgap4	Rat	identical protein binding	enables	ISO	ARHGAP4 (Homo sapiens) and UniProtKB:P98171-1	1624291	UniProtKB:P98171-1 and PMID:26365803	RGD	PMID:26365803
Arhgap4	Rat	protein binding	enables	ISO	ARHGAP4 (Homo sapiens)	1624291	UniProtKB:P55160 and PMID:16417406	RGD	PMID:16417406

#	Reference Title	Reference Citation
1.	Cloning of rat ARHGAP4/C1, a RhoGAP family member expressed in the nervous system that colocalizes with the Golgi complex and microtubules.	Foletta VC, etal., Brain Res Mol Brain Res 2002 Oct 30;107(1):65-79.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	RefSeq and LocusLink: NCBI gene-centered resources	Pruitt KD and Maglott DR, Nucleic Acids Res. 2001 Jan 1;29(1):137-40.
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	ARHGAP4 is a novel RhoGAP that mediates inhibition of cell motility and axon outgrowth.	Vogt DL, etal., Mol Cell Neurosci. 2007 Nov;36(3):332-42. Epub 2007 Jul 24.

PMID:26365803

Arhgap4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	156,787,566 - 156,802,841 (-)	NCBI		GRCr8
mRatBN7.2	X	151,636,071 - 151,651,528 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	151,632,454 - 151,651,128 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	153,777,408 - 153,792,281 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	157,340,624 - 157,355,497 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	155,012,457 - 155,027,330 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	156,873,094 - 156,888,762 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	156,873,849 - 156,888,761 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	152,621,929 - 152,636,830 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	159,824,136 - 159,839,008 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	159,895,781 - 159,914,456 (-)	NCBI
Celera	1	136,240,986 - 136,255,858 (+)	NCBI		Celera
Cytogenetic Map	X	q37	NCBI

ARHGAP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	153,907,378 - 153,926,264 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	153,907,367 - 153,934,999 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	153,172,832 - 153,191,718 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	152,826,025 - 152,844,892 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	152,693,677 - 152,712,545	NCBI
Celera	X	153,406,543 - 153,425,434 (-)	NCBI		Celera
Cytogenetic Map	X	q28	NCBI
HuRef	X	141,824,230 - 141,844,372 (-)	NCBI		HuRef
CHM1_1	X	153,047,278 - 153,066,168 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	152,181,090 - 152,199,981 (-)	NCBI		T2T-CHM13v2.0

Arhgap4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	72,937,958 - 72,954,945 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	72,935,048 - 72,965,476 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	73,894,352 - 73,911,345 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	73,891,442 - 73,921,870 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	71,139,691 - 71,156,637 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	70,147,078 - 70,163,949 (-)	NCBI		MGSCv36	mm8
Celera	X	65,146,782 - 65,163,733 (-)	NCBI		Celera
Cytogenetic Map	X	A7.3	NCBI
cM Map	X	37.45	NCBI

Arhgap4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955580	586,986 - 600,299 (-)	NCBI	ChiLan1.0	ChiLan1.0

ARHGAP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	153,952,137 - 153,971,360 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	153,955,743 - 153,975,083 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	143,462,157 - 143,481,496 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	153,349,050 - 153,367,709 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	153,349,050 - 153,367,709 (-)	Ensembl	panpan1.1		panPan2

ARHGAP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	121,754,965 - 121,772,209 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	121,755,221 - 121,772,541 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	107,083,712 - 107,100,978 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	124,896,249 - 124,913,499 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	124,896,263 - 124,913,532 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	120,665,512 - 120,682,776 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	123,180,944 - 123,198,176 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	122,942,263 - 122,959,510 (-)	NCBI		UU_Cfam_GSD_1.0

Arhgap4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	119,053,506 - 119,069,677 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936809	791,274 - 807,450 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936809	791,275 - 807,448 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARHGAP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	124,641,226 - 124,655,279 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	124,641,222 - 124,655,312 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	142,205,952 - 142,220,121 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103232807
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	128,331,693 - 128,351,169 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	128,330,060 - 128,350,324 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666473	133 - 21,510 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arhgap4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624946	543,542 - 556,865 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Arhgap4
7 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	54
Count of miRNA genes:	51
Interacting mature miRNAs:	53
Transcripts:	ENSRNOT00000056344
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634346	Insul4	Insulin level QTL 4	0		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	X	126975089	152453651	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat

RH127646

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	151,635,683 - 151,635,868 (-)	MAPPER	mRatBN7.2
Rnor_6.0	X	156,889,138 - 156,889,322	NCBI	Rnor6.0
Rnor_5.0	1	152,637,206 - 152,637,390	UniSTS	Rnor5.0
RGSC_v3.4	X	159,823,576 - 159,823,760	UniSTS	RGSC3.4
Celera	1	136,256,234 - 136,256,418	UniSTS
Cytogenetic Map	X	q37	UniSTS

AI028822

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	X	156,787,592 - 156,787,793 (+)	Marker Load Pipeline
mRatBN7.2	X	151,636,270 - 151,636,471 (-)	MAPPER	mRatBN7.2
Rnor_6.0	X	156,888,535 - 156,888,735	NCBI	Rnor6.0
Rnor_5.0	1	152,636,603 - 152,636,803	UniSTS	Rnor5.0
RGSC_v3.4	X	159,824,163 - 159,824,363	UniSTS	RGSC3.4
Celera	1	136,255,631 - 136,255,831	UniSTS
Cytogenetic Map	X	q37	UniSTS

REN88106

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	151,634,689 - 151,634,951 (-)	MAPPER	mRatBN7.2
Rnor_6.0	X	156,890,055 - 156,890,316	NCBI	Rnor6.0
Rnor_5.0	1	152,638,123 - 152,638,384	UniSTS	Rnor5.0
RGSC_v3.4	X	159,822,582 - 159,822,843	UniSTS	RGSC3.4
Celera	1	136,257,151 - 136,257,412	UniSTS
Cytogenetic Map	X	q37	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_144740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF401635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY742900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO572120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000085410 ⟹ ENSRNOP00000069460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	151,632,454 - 151,651,128 (-)	Ensembl
Rnor_6.0 Ensembl	X	156,873,849 - 156,888,761 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104884 ⟹ ENSRNOP00000091062

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	151,632,454 - 151,651,128 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109725 ⟹ ENSRNOP00000094863

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	151,632,454 - 151,651,128 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109822 ⟹ ENSRNOP00000083983

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	151,632,454 - 151,651,128 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117215 ⟹ ENSRNOP00000095360

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	151,632,454 - 151,651,128 (-)	Ensembl

RefSeq Acc Id:

NM_144740 ⟹ NP_653341

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,787,566 - 156,802,438 (-)	NCBI
mRatBN7.2	X	151,636,244 - 151,651,116 (-)	NCBI
Rnor_6.0	X	156,873,890 - 156,888,762 (+)	NCBI
Rnor_5.0	1	152,621,929 - 152,636,830 (+)	NCBI
RGSC_v3.4	X	159,824,136 - 159,839,008 (-)	RGD
Celera	1	136,240,986 - 136,255,858 (+)	NCBI

Sequence:

show sequence

GGGTGCTGGCTTTAGCACCCCTGGTCCCTGCTCTCGGCGGTCTCGCCTCGCTGCTTCCGCGTGGAAGCGTTGGGACTTGGTGCAATCGCCCCTCAGCCATGGCGGCGCACGGGAAGTTGCGGCGGGAG
CGGGGACTGCAACCCGAGTATGAGGCACAGGTCAAAGTGATGCGCGGGCAGTTGAGTGAGCAGCTTCATTGCCTGGAGCTTCAGGGAGAGCTGCGGCGCGATTTGCTGCTGGAGCTAGCTGAGTTCAT
GCGGCGTCGAGCAGAGGTGGAGCTGGAGTATTCTCGGGGCCTGGACAAGTTGGCTGAACGCTTTACTAGCCGCAGTGGACGCCTTGGAGGCAGCAGCCGGGAGCAGCAAAGTTTCCGGAAGGAGCCAA
CTCTCCTGTCACCCTTGCACTGCTGGGCTATGCTGCTGGAACATACTCGGCAGCAGAGTCGGGAAAGTGCTACCCTCAGTGAGGTGCTGGCTGGACCTCTGGCACAGCGCCTGAGTCACATTGCCGAG
GATGTAGGACGCATTGTCAAAAAGAGTAAGGACCTGGTGCAGCAACTGCAGGATGAGCTCCTGGAGGTGGTCTCAGAACTCCAGACACAGGGCTACCTTGCCTGGGCCTCCCTGCAGACCAAGAAGAC
GTACCATGTATACCACTTGGAGAGCATGAATGCTGAGACTAAACTTCGGGAAGCTGAGAGGCAAGAGGAGAAGCGGTCAGGCAAGAGTGCCTTGCCCACCACTACTGCTGCCTCTGCCACCACCACCA
TCACCATTGAGACAGAGCTCCACCGAAAGGGCTCTCTCAAGAAAGGAGGGCGGCTAGTGGAGAAGCGTCAGGCCAAGTTCTTGGAACATAAACTTAAATGCACCAAGGCCCGAAATGAGTACCTGCTC
AGCCTGGCCAGTGTCAATGCTGCTGTCAGCAACTACTACTTACACGATATCTTGGACCTCATGGATTGCTGTGACACAGGTTTCCACTTGGCCCTGGAGCAGGCCCTCCGAAGCTACACAGCCGCTGA
AAGCCGCACCCAAACCTCTCACATGCAGGGTTTAGGCAGTCTGGAAGAGGCTCTAGAGGCCTTGGATCCTCCAGGGGACAAAGCCAAAGTGCTTGAGGTTCATGCCATGGCCTTCTGTCCCCCTCTAC
GTTTTGACTACCAGCCCCATGAAGGTGATGAGGTGGCTGAGATCCAGGTTGAGATGGAACTTCGGGATGAGATTTTGCCCAGAGCCCAAAACATCCAAAGTCGCCTGGACCAAAAGACCATTGAGACA
GAAGAGGTGAATAAGACACTGAAGGCAACACTTCAGGCTCTGCTAGAGGTGGTGGCATCAGAGGATGGAGATATACTGGACTCTTTGCAGGCCAGCCCCTCCACTGAGTCCCTCAAGTCTACAAGCTC
AGACCCAGGCACCCGACAGGCAGGCCGCAGACGGAACCAGCAGCAGGAGACAGAAACCTTCTATATTACGAAGCTGCAGGAATATCTGAGTGGCCGGAGCATCCTTGCCAAGCTGCAGGCCAAGCATG
AAAAGCTCCAGGAAGCCATACAACGAGGTAACAAGGAAGAGCAAGAGACATCTTCTTGGACCCAATGCACAGAGAGAAAATTCCATAAGAGCCACCACCCCTATCCTGGATCCCAGTGTACCCAGAGA
CTTTTTGGAGGTGATCTAGAGAAGTTTATCCAGAGCACAGGCCAACCTGTGCCCCTTGTGGTGAAGAGCTGTATCCGCTTCATTAACCTCAATGGCCTGCAACATGAAGGCATCTTCCGGGTATCAGG
TGCCCAGGCCCGGATATTGGAGATCCGAGATGCCTTTGAAAGAGGGGAGGACCCTCTGGTGGAAGGCTGTACTGCCCATGACCTAGACTCAGTGGCTGGGGTACTAAAGCTGTACTTCCGGAGCCTGG
AGCCCCCACTGTTCCCCTTGGACATGTTTAATGAGCTGCTGGCTTCAGCAGAACTGGAAGTTGTGGGTGAGCGGGTAGAGCTTGTGAGCCATCTACTATCCAGACTACCCAGACCTGTGCTAGTGGTC
TTGCGATATCTCTTCACCTTCCTCAACCACCTGGCCCAGTACAGCGATGAGAACATGATGGACTCCTACAACTTGGCTGTATGTTTTGGGCCCACGCTGTTGCCTGTGCCTGCTGGGCAGGACCCTGT
AGCCTTGCAGGGCCGAGTGAACCAGCTGGTCCAGACCCTTATCCTGCAACCAGCATGGGTTTTCCCACCCACAGCCATGCTACCAGGTCCCATCTATGAGAAGTGCATGGCACCACCTTCTGCCAGCT
GCCTGGGGGATGGCCAGTTGGAGAGCCTTGCTGGGGAGCCAGAGCTGGAATTGAAAACTGGGACCAAAGCTCAGGAAGATGACTCCGAGGGAGTTGTGGAGGCTGTGGCCTGCTTTGCTTACACTGGC
CGCACGGCCCAGGAGCTGACATTCCAGCAAGGGGATACGCTGAGATTGTATGCTCGGGCATCAAGTGACTGGTGGCGAGGGGAGCATGCTGGTGTGCGGGGGCTCATTCCCCATAAGTACATCACACT
GTCTGAGGGGGATGAGAAGCAGATGACTGGTTCAGGATTACAGGCCATGGGGGAATCTCTGAGCCATCCAGAAAGCGTCCTGACCTTGGAGTTTACCAACCGACTGGAACTAGGCACCCCACCTGAGG
CTTTGGGCCCCTCTGGTCACAGACGACACTGTTTGGTCCCTACCTCCCCTGAGCAACATGTGGAAATGGATAAGGCTGTGGCGCAGAACATGGATTCTGTGTTTAAGGAGCTCTTGGGAAAGGCTGCT
GTCCGCCAGGGCCATGGGCTAGCATCTACAGCCTCCCCCAGTCTAGGAACTCGAAACCTGAAGCCCCTGGCCTGCAGCAGCTTCAGCAAAAACAAAGTCTTCTCCCGGGGACCTGGGGCTCCAGTTTC
CCCCTCAGTTTCCCATCCCCAGGGTCCAGATTCAACTCGCAAGCCAGTCTGAGGCAGCTCACCTCCAACAGACACCAGCAAGCCCACCATTACACCAAGCCTCACCCCAGCCCTGCTCTAGGTCTCTT
GGGAGGTAGCAAAGGAAGGAGGCTGGAGAGAAGCCCTTCTTGTGCCTTTGCTTGGAAGCTTTGGGCTGTAGCTGTGGAAGGTGGAAGCAACAGTAATTCATAAAGACCCATGTACTGTTGTAA

hide sequence

RefSeq Acc Id:

XM_006229545 ⟹ XP_006229607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,787,566 - 156,802,479 (-)	NCBI
mRatBN7.2	X	151,636,244 - 151,651,158 (-)	NCBI
Rnor_6.0	X	156,873,094 - 156,888,762 (+)	NCBI
Rnor_5.0	1	152,621,929 - 152,636,830 (+)	NCBI

Sequence:

show sequence

CCTGTGAATGAGACAAAACAAAACATGACAAATTGATGAGTAGATTAGAGTTGATGGGGGTGAATGAAATCACCATTATCCTTGGATAAAGGAGGCAATAGGAGTTCTTCCCAGGCTGGTTCGAAGCC
CCCCACTAGTATAGGTCTTACAGGTGCAAGATAGAAGAGAAAAGAGACAAAAAAGAGTCTCTTCCGGCAGCAGGAAGTGGTAGCTACCTATGGGGAAATGAAGCTAGCTCTTTCCTTTGGGGCTGAGT
AGAAGGGGAACTATAGCTGAACCCTGCTCCCTCCCCCTCAGGGGGCCCAGAGGGAACGCTGGCCTGCAGTCCTCTGGGGAACTTCCCATCCAGCTGTCTGGACTTCCTTAGGCCTCACTCTGGGTTAT
GACTCCGGAAGGAGGGTGGCATCTGATGTCCAGGAAGGCTGGGGAAGCAGACCACCTAGGAACAGTCTTGAGCCTGTAGCAGCTATGGTGCCATTGTCCATTAGTATTGAGGGCCAGTGGCCATAAGG
GTGTGGTCTGACACTGGGGACCACATATAGGTTTCTGCAGATAATGAGGAATAACAGCAGGTGGTCCCAGACATGTTGTTCTCTTGCATTACTGTTTTATGTTGACGCTTTGGACTCAAGGTGATCTA
GATAGAGGAGCAACTTGCCTTAAGAGAGATGAGCCTGAAAAGGGGTACCTAGTCTTTCAGAGGCTCACCAGGGCAGTGCCAGGTTCAAGTTGCCCCGCCCCTCTAGGGACCTGCTGAGGGCGGGGCTG
GCAGGGCTGGCAAGGCGGAGCCCGTGGAGGGTGCTGGCTTTAGCACCCCTGGTCCCTGCTCTCGGCGGTCTCGCCTCGCTGCTTCCGCGTGGAAGCGTTGGGACTTGGTGCAATCGCCCCTCAGCCAT
GGCGGCGCACGGGAAGTTGCGGCGGGAGCGGGGACTGCAACCCGAGTATGAGGCACAGGTCAAAGTGATGCGCGGGCAGTTGAGTGAGCAGCTTCATTGCCTGGAGCTTCAGGGAGAGCTGCGGCGGG
ATTTGCTGCTGGAGCTAGCTGAGTTCATGCGGCGTCGAGCAGAGGTGGAGCTGGAGTATTCTCGGGGCCTGGACAAGTTGGCTGAACGCTTTACTAGCCGCAGTGGACGCCTTGGAGGCAGCAGCCGG
GAGCAGCAAAGTTTCCGGAAGGAGCCAACTCTCCTGTCACCCTTGCACTGCTGGGCTATGCTGCTGGAACATACTCGGCAGCAGAGTCGGGAAAGTGCTACCCTCAGTGAGGTGCTGGCTGGACCTCT
GGCACAGCGCCTGAGTCACATTGCCGAGGATGTAGGACGCATTGTCAAAAAGAGTAAGGACCTGGTGCAGCAACTGCAGGATGAGCTCCTGGAGGTGGTCTCAGAACTCCAGACAACCAAGAAGACGT
ACCATGTATACCACTTGGAGAGCATGAATGCTGAGACTAAACTTCGGGAAGCTGAGAGGCAAGAGGAGAAGCGGTCAGGCAAGAGTGCCTTGCCCACCACTACTGCTGCCTCTGCCACCACCACCATC
ACCATTGAGACAGAGCTCCACCGAAAGGGCTCTCTCAAGAAAGGAGGGCGGCTAGTGGAGAAGCGTCAGGCCAAGTTCTTGGAACATAAACTTAAATGCACCAAGGCCCGAAATGAGTACCTGCTCAG
CCTGGCCAGTGTCAATGCTGCTGTCAGCAACTACTACTTACACGATATCTTGGACCTCATGGATTGCTGTGACACAGGTTTCCACTTGGCCCTGGAGCAGGCCCTCCGAAGCTACACAGCCGCTGAAA
GCCGCACCCAAACCTCTCACATGCAGGGTTTAGGCAGTCTGGAAGAGGCTCTAGAGGCCTTGGATCCTCCAGGGGACAAAGCCAAAGTGCTTGAGGTTCATGCCATGGCCTTCTGTCCCCCTCTACGT
TTTGACTACCAGCCCCATGAAGGTGATGAGGTGGCTGAGATCCAGGTTGAGATGGAACTTCGGGATGAGATTTTGCCCAGAGCCCAAAACATCCAAAGTCGCCTGGACCAAAAGACCATTGAGACAGA
AGAGGTGAATAAGACACTGAAGGCAACACTTCAGGCTCTGCTAGAGGTGGTGGCATCAGAGGATGGAGATATACTGGACTCTTTGCAGGCCAGCCCCTCCACTGAGTCCCTCAAGTCTACAAGCTCAG
ACCCAGGCACCCGACAGGCAGGCCGCAGACGGAACCAGCAGCAGGAGACAGAAACCTTCTATATTACGAAGCTGCAGGAATATCTGAGTGGCCGGAGCATCCTTGCCAAGCTGCAGGCCAAGCATGAA
AAGCTCCAGGAAGCCATACAACGAGGTAACAAGGAAGAGCAAGAGACATCTTCTTGGACCCAATGCACAGAGAGAAAATTCCATAAGAGCCACCACCCCTATCCTGGATCCCAGTGTACCCAGAGACT
TTTTGGAGGTGATCTAGAGAAGTTTATCCAGAGCACAGGCCAACCTGTGCCCCTTGTGGTGAAGAGCTGTATCCGCTTCATTAACCTCAATGGCCTGCAACATGAAGGCATCTTCCGGGTATCAGGTG
CCCAGGCCCGGATATTGGAGATCCGAGATGCCTTTGAAAGAGGGGAGGACCCTCTGGTGGAAGGCTGTACTGCCCATGACCTAGACTCAGTGGCTGGGGTACTAAAGCTGTACTTCCGGAGCCTGGAG
CCCCCACTGTTCCCCTTGGACATGTTTAATGAGCTGCTGGCTTCAGCAGAACTGGAAGTTGTGGGTGAGCGGGTAGAGCTTGTGAGCCATCTACTATCCAGACTACCCAGACCTGTGCTAGTGGTCTT
GCGATATCTCTTCACCTTCCTCAACCACCTGGCCCAGTACAGCGATGAGAACATGATGGACTCCTACAACTTGGCTGTATGTTTTGGGCCCACGCTGTTGCCTGTGCCTGCTGGGCAGGACCCTGTAG
CCTTGCAGGGCCGAGTGAACCAGCTGGTCCAGACCCTTATCCTGCAACCAGCATGGGTTTTCCCACCCACAGCCATGCTACCAGGTCCCATCTATGAGAAGTGCATGGCACCACCTTCTGCCAGCTGC
CTGGGGGATGGCCAGTTGGAGAGCCTTGCTGGGGAGCCAGAGCTGGAATTGAAAACTGGGACCAAAGCTCAGGAAGATGACTCCGAGGGAGTTGTGGAGGCTGTGGCCTGCTTTGCTTACACTGGCCG
CACGGCCCAGGAGCTGACATTCCAGCAAGGGGATACGCTGAGATTGTATGCTCGGGCATCAAGTGACTGGTGGCGAGGGGAGCATGCTGGTGTGCGGGGGCTCATTCCCCATAAGTACATCACACTGT
CTGAGGGGGATGAGAAGCAGATGACTGGTTCAGGATTACAGGCCATGGGGGAATCTCTGAGCCATCCAGAAAGCGTCCTGACCTTGGAGTTTACCAACCGACTGGAACTAGGCACCCCACCTGAGGCT
TTGGGCCCCTCTGGTCACAGACGACACTGTTTGGTCCCTACCTCCCCTGAGCAACATGTGGAAATGGATAAGGCTGTGGCGCAGAACATGGATTCTGTGTTTAAGGAGCTCTTGGGAAAGGCTGCTGT
CCGCCAGGGCCATGGGCTAGCATCTACAGCCTCCCCCAGTCTAGGAACTCGAAACCTGAAGCCCCTGGCCTGCAGCAGCTTCAGCAAAAACAAAGTCTTCTCCCGGGGACCTGGGGCTCCAGTTTCCC
CCTCAGTTTCCCATCCCCAGGGTCCAGATTCAACTCGCAAGCCAGTCTGAGGCAGCTCACCTCCAACAGACACCAGCAAGCCCACCATTACACCAAGCCTCACCCCAGCCCTGCTCTAGGTCTCTTGG
GAGGTAGCAAAGGAAGGAGGCTGGAGAGAAGCCCTTCTTGTGCCTTTGCTTGGAAGCTTTGGGCTGTAGCTGTGGAAGGTGGAAGCAACAGTAATTCATAAAGACCCATGTACTGTTGTAA

hide sequence

RefSeq Acc Id:

XM_006229546 ⟹ XP_006229608

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,787,566 - 156,802,480 (-)	NCBI
mRatBN7.2	X	151,636,244 - 151,651,160 (-)	NCBI
Rnor_6.0	X	156,873,094 - 156,888,762 (+)	NCBI
Rnor_5.0	1	152,621,929 - 152,636,830 (+)	NCBI

Sequence:

show sequence

CCTGTGAATGAGACAAAACAAAACATGACAAATTGATGAGTAGATTAGAGTTGATGGGGGTGAATGAAATCACCATTATCCTTGGATAAAGGAGGCAATAGGAGTTCTTCCCAGGCTGGTTCGAAGCC
CCCCACTAGTATAGGTCTTACAGGTGCAAGATAGAAGAGAAAAGAGACAAAAAAGAGTCTCTTCCGGCAGCAGGAAGTGGTAGCTACCTATGGGGAAATGAAGCTAGCTCTTTCCTTTGGGGCTGAGT
AGAAGGGGAACTATAGCTGAACCCTGCTCCCTCCCCCTCAGGGGGCCCAGAGGGAACGCTGGCCTGCAGTCCTCTGGGGAACTTCCCATCCAGCTGTCTGGACTTCCTTAGGCCTCACTCTGGGTTAT
GACTCCGGAAGGAGGGTGGCATCTGATGTCCAGGAAGGCTGGGGAAGCAGACCACCTAGGAACAGTCTTGAGCCTGTAGCAGCTATGGTGCCATTGTCCATTAGTATTGAGGGCCAGTGGCCATAAGG
GTGTGGTCTGACACTGGGGACCACATATAGGTTTCTGCAGATAATGAGGAATAACAGCAGGTGGTCCCAGACATGTTGTTCTCTTGCATTACTGTTTTATGTTGACGCTTTGGACTCAAGGTGATCTA
GATAGAGGAGCAACTTGCCTTAAGAGAGATGAGCCTGAAAAGGGGTACCTAGTCTTTCAGAGGCTCACCAGGGCAGTGCCAGGTTCAAGTTGCCCCGCCCCTCTAGGGACCTGCTGAGGGCGGGGCTG
GCAGGGCTGGCAAGGCGGAGCCCGTGGAGGGTGCTGGCTTTAGCACCCCTGGTCCCTGCTCTCGGCGGTCTCGCCTCGCTGCTTCCGCGTGGAAGCGTTGGGACTTGGTGCAATCGCCCCTCAGCCAT
GGCGGCGCACGGGAAGTTGCGGCGGGAGCGGGGACTGCAACCCGAGTATGAGGCACAGGTCAAAGTGATGCGCGGGCAGTTGAGTGAGCAGCTTCATTGCCTGGAGCTTCAGGGAGAGCTGCGGCGGG
ATTTGCTGCTGGAGCTAGCTGAGTTCATGCGGCGTCGAGCAGAGGTGGAGCTGGAGTATTCTCGGGGCCTGGACAAGTTGGCTGAACGCTTTACTAGCCGCAGTGGACGCCTTGGAGGCAGCAGCCGG
GAGCAGCAAAGTTTCCGGAAGGAGCCAACTCTCCTGTCACCCTTGCACTGCTGGGCTATGCTGCTGGAACATACTCGGCAGCAGAGTCGGGAAAGTGCTACCCTCAGTGAGGTGCTGGCTGGACCTCT
GGCACAGCGCCTGAGTCACATTGCCGAGGATGTAGGACGCATTGTCAAAAAGACCAAGAAGACGTACCATGTATACCACTTGGAGAGCATGAATGCTGAGACTAAACTTCGGGAAGCTGAGAGGCAAG
AGGAGAAGCGGTCAGGCAAGAGTGCCTTGCCCACCACTACTGCTGCCTCTGCCACCACCACCATCACCATTGAGACAGAGCTCCACCGAAAGGGCTCTCTCAAGAAAGGAGGGCGGCTAGTGGAGAAG
CGTCAGGCCAAGTTCTTGGAACATAAACTTAAATGCACCAAGGCCCGAAATGAGTACCTGCTCAGCCTGGCCAGTGTCAATGCTGCTGTCAGCAACTACTACTTACACGATATCTTGGACCTCATGGA
TTGCTGTGACACAGGTTTCCACTTGGCCCTGGAGCAGGCCCTCCGAAGCTACACAGCCGCTGAAAGCCGCACCCAAACCTCTCACATGCAGGGTTTAGGCAGTCTGGAAGAGGCTCTAGAGGCCTTGG
ATCCTCCAGGGGACAAAGCCAAAGTGCTTGAGGTTCATGCCATGGCCTTCTGTCCCCCTCTACGTTTTGACTACCAGCCCCATGAAGGTGATGAGGTGGCTGAGATCCAGGTTGAGATGGAACTTCGG
GATGAGATTTTGCCCAGAGCCCAAAACATCCAAAGTCGCCTGGACCAAAAGACCATTGAGACAGAAGAGGTGAATAAGACACTGAAGGCAACACTTCAGGCTCTGCTAGAGGTGGTGGCATCAGAGGA
TGGAGATATACTGGACTCTTTGCAGGCCAGCCCCTCCACTGAGTCCCTCAAGTCTACAAGCTCAGACCCAGGCACCCGACAGGCAGGCCGCAGACGGAACCAGCAGCAGGAGACAGAAACCTTCTATA
TTACGAAGCTGCAGGAATATCTGAGTGGCCGGAGCATCCTTGCCAAGCTGCAGGCCAAGCATGAAAAGCTCCAGGAAGCCATACAACGAGGTAACAAGGAAGAGCAAGAGACATCTTCTTGGACCCAA
TGCACAGAGAGAAAATTCCATAAGAGCCACCACCCCTATCCTGGATCCCAGTGTACCCAGAGACTTTTTGGAGGTGATCTAGAGAAGTTTATCCAGAGCACAGGCCAACCTGTGCCCCTTGTGGTGAA
GAGCTGTATCCGCTTCATTAACCTCAATGGCCTGCAACATGAAGGCATCTTCCGGGTATCAGGTGCCCAGGCCCGGATATTGGAGATCCGAGATGCCTTTGAAAGAGGGGAGGACCCTCTGGTGGAAG
GCTGTACTGCCCATGACCTAGACTCAGTGGCTGGGGTACTAAAGCTGTACTTCCGGAGCCTGGAGCCCCCACTGTTCCCCTTGGACATGTTTAATGAGCTGCTGGCTTCAGCAGAACTGGAAGTTGTG
GGTGAGCGGGTAGAGCTTGTGAGCCATCTACTATCCAGACTACCCAGACCTGTGCTAGTGGTCTTGCGATATCTCTTCACCTTCCTCAACCACCTGGCCCAGTACAGCGATGAGAACATGATGGACTC
CTACAACTTGGCTGTATGTTTTGGGCCCACGCTGTTGCCTGTGCCTGCTGGGCAGGACCCTGTAGCCTTGCAGGGCCGAGTGAACCAGCTGGTCCAGACCCTTATCCTGCAACCAGCATGGGTTTTCC
CACCCACAGCCATGCTACCAGGTCCCATCTATGAGAAGTGCATGGCACCACCTTCTGCCAGCTGCCTGGGGGATGGCCAGTTGGAGAGCCTTGCTGGGGAGCCAGAGCTGGAATTGAAAACTGGGACC
AAAGCTCAGGAAGATGACTCCGAGGGAGTTGTGGAGGCTGTGGCCTGCTTTGCTTACACTGGCCGCACGGCCCAGGAGCTGACATTCCAGCAAGGGGATACGCTGAGATTGTATGCTCGGGCATCAAG
TGACTGGTGGCGAGGGGAGCATGCTGGTGTGCGGGGGCTCATTCCCCATAAGTACATCACACTGTCTGAGGGGGATGAGAAGCAGATGACTGGTTCAGGATTACAGGCCATGGGGGAATCTCTGAGCC
ATCCAGAAAGCGTCCTGACCTTGGAGTTTACCAACCGACTGGAACTAGGCACCCCACCTGAGGCTTTGGGCCCCTCTGGTCACAGACGACACTGTTTGGTCCCTACCTCCCCTGAGCAACATGTGGAA
ATGGATAAGGCTGTGGCGCAGAACATGGATTCTGTGTTTAAGGAGCTCTTGGGAAAGGCTGCTGTCCGCCAGGGCCATGGGCTAGCATCTACAGCCTCCCCCAGTCTAGGAACTCGAAACCTGAAGCC
CCTGGCCTGCAGCAGCTTCAGCAAAAACAAAGTCTTCTCCCGGGGACCTGGGGCTCCAGTTTCCCCCTCAGTTTCCCATCCCCAGGGTCCAGATTCAACTCGCAAGCCAGTCTGAGGCAGCTCACCTC
CAACAGACACCAGCAAGCCCACCATTACACCAAGCCTCACCCCAGCCCTGCTCTAGGTCTCTTGGGAGGTAGCAAAGGAAGGAGGCTGGAGAGAAGCCCTTCTTGTGCCTTTGCTTGGAAGCTTTGGG
CTGTAGCTGTGGAAGGTGGAAGCAACAGTAATTCATAAAGACCCATGTACTGTTGTAA

hide sequence

RefSeq Acc Id:

XM_039099451 ⟹ XP_038955379

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,787,566 - 156,802,486 (-)	NCBI
mRatBN7.2	X	151,636,071 - 151,651,166 (-)	NCBI

RefSeq Acc Id:

XM_039099452 ⟹ XP_038955380

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,787,566 - 156,802,483 (-)	NCBI
mRatBN7.2	X	151,636,244 - 151,651,163 (-)	NCBI

RefSeq Acc Id:

XM_039099453 ⟹ XP_038955381

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,787,566 - 156,802,485 (-)	NCBI
mRatBN7.2	X	151,636,244 - 151,651,165 (-)	NCBI

RefSeq Acc Id:

XM_039099454 ⟹ XP_038955382

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,787,566 - 156,802,488 (-)	NCBI
mRatBN7.2	X	151,636,244 - 151,651,168 (-)	NCBI

RefSeq Acc Id:

XM_039099456 ⟹ XP_038955384

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,787,566 - 156,802,488 (-)	NCBI
mRatBN7.2	X	151,636,244 - 151,651,169 (-)	NCBI

RefSeq Acc Id:

XM_039099457 ⟹ XP_038955385

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,787,566 - 156,802,484 (-)	NCBI
mRatBN7.2	X	151,636,244 - 151,651,164 (-)	NCBI

RefSeq Acc Id:

XM_063279778 ⟹ XP_063135848

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,787,566 - 156,802,480 (-)	NCBI

RefSeq Acc Id:

XM_063279779 ⟹ XP_063135849

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,787,566 - 156,802,481 (-)	NCBI

RefSeq Acc Id:

XR_005497911

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,790,541 - 156,802,841 (-)	NCBI
mRatBN7.2	X	151,639,219 - 151,651,528 (-)	NCBI


Protein RefSeqs	NP_653341	(Get FASTA)	NCBI Sequence Viewer
	XP_006229607	(Get FASTA)	NCBI Sequence Viewer
	XP_006229608	(Get FASTA)	NCBI Sequence Viewer
	XP_038955379	(Get FASTA)	NCBI Sequence Viewer
	XP_038955380	(Get FASTA)	NCBI Sequence Viewer
	XP_038955381	(Get FASTA)	NCBI Sequence Viewer
	XP_038955382	(Get FASTA)	NCBI Sequence Viewer
	XP_038955384	(Get FASTA)	NCBI Sequence Viewer
	XP_038955385	(Get FASTA)	NCBI Sequence Viewer
	XP_063135848	(Get FASTA)	NCBI Sequence Viewer
	XP_063135849	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAM46625	(Get FASTA)	NCBI Sequence Viewer
	AAU95211	(Get FASTA)	NCBI Sequence Viewer
	EDL85005	(Get FASTA)	NCBI Sequence Viewer
	EDL85006	(Get FASTA)	NCBI Sequence Viewer
	EDL85007	(Get FASTA)	NCBI Sequence Viewer
	EDL85008	(Get FASTA)	NCBI Sequence Viewer
	EDL85009	(Get FASTA)	NCBI Sequence Viewer
	EDL85010	(Get FASTA)	NCBI Sequence Viewer
	EDL85011	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069460
	ENSRNOP00000069460.2
	ENSRNOP00000083983
	ENSRNOP00000083983.1
	ENSRNOP00000091062
	ENSRNOP00000091062.1
	ENSRNOP00000094863
	ENSRNOP00000094863.1
	ENSRNOP00000095360
	ENSRNOP00000095360.1

RefSeq Acc Id:

NP_653341 ⟸ NM_144740

- UniProtKB:

Q8K4G7 (UniProtKB/TrEMBL), A0A0G2JVF0 (UniProtKB/TrEMBL), A6KRT9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAHGKLRRERGLQPEYEAQVKVMRGQLSEQLHCLELQGELRRDLLLELAEFMRRRAEVELEYSRGLDKLAERFTSRSGRLGGSSREQQSFRKEPTLLSPLHCWAMLLEHTRQQSRESATLSEVLAGP
LAQRLSHIAEDVGRIVKKSKDLVQQLQDELLEVVSELQTQGYLAWASLQTKKTYHVYHLESMNAETKLREAERQEEKRSGKSALPTTTAASATTTITIETELHRKGSLKKGGRLVEKRQAKFLEHKLK
CTKARNEYLLSLASVNAAVSNYYLHDILDLMDCCDTGFHLALEQALRSYTAAESRTQTSHMQGLGSLEEALEALDPPGDKAKVLEVHAMAFCPPLRFDYQPHEGDEVAEIQVEMELRDEILPRAQNIQ
SRLDQKTIETEEVNKTLKATLQALLEVVASEDGDILDSLQASPSTESLKSTSSDPGTRQAGRRRNQQQETETFYITKLQEYLSGRSILAKLQAKHEKLQEAIQRGNKEEQETSSWTQCTERKFHKSHH
PYPGSQCTQRLFGGDLEKFIQSTGQPVPLVVKSCIRFINLNGLQHEGIFRVSGAQARILEIRDAFERGEDPLVEGCTAHDLDSVAGVLKLYFRSLEPPLFPLDMFNELLASAELEVVGERVELVSHLL
SRLPRPVLVVLRYLFTFLNHLAQYSDENMMDSYNLAVCFGPTLLPVPAGQDPVALQGRVNQLVQTLILQPAWVFPPTAMLPGPIYEKCMAPPSASCLGDGQLESLAGEPELELKTGTKAQEDDSEGVV
EAVACFAYTGRTAQELTFQQGDTLRLYARASSDWWRGEHAGVRGLIPHKYITLSEGDEKQMTGSGLQAMGESLSHPESVLTLEFTNRLELGTPPEALGPSGHRRHCLVPTSPEQHVEMDKAVAQNMDS
VFKELLGKAAVRQGHGLASTASPSLGTRNLKPLACSSFSKNKVFSRGPGAPVSPSVSHPQGPDSTRKPV

hide sequence

RefSeq Acc Id:	XP_006229607 ⟸ XM_006229545
- Peptide Label:	isoform X3
- UniProtKB:	A6KRU0 (UniProtKB/TrEMBL), Q8K4G7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAHGKLRRERGLQPEYEAQVKVMRGQLSEQLHCLELQGELRRDLLLELAEFMRRRAEVELEYSRGLDKLAERFTSRSGRLGGSSREQQSFRKEPTLLSPLHCWAMLLEHTRQQSRESATLSEVLAGP LAQRLSHIAEDVGRIVKKSKDLVQQLQDELLEVVSELQTTKKTYHVYHLESMNAETKLREAERQEEKRSGKSALPTTTAASATTTITIETELHRKGSLKKGGRLVEKRQAKFLEHKLKCTKARNEYLL SLASVNAAVSNYYLHDILDLMDCCDTGFHLALEQALRSYTAAESRTQTSHMQGLGSLEEALEALDPPGDKAKVLEVHAMAFCPPLRFDYQPHEGDEVAEIQVEMELRDEILPRAQNIQSRLDQKTIET EEVNKTLKATLQALLEVVASEDGDILDSLQASPSTESLKSTSSDPGTRQAGRRRNQQQETETFYITKLQEYLSGRSILAKLQAKHEKLQEAIQRGNKEEQETSSWTQCTERKFHKSHHPYPGSQCTQR LFGGDLEKFIQSTGQPVPLVVKSCIRFINLNGLQHEGIFRVSGAQARILEIRDAFERGEDPLVEGCTAHDLDSVAGVLKLYFRSLEPPLFPLDMFNELLASAELEVVGERVELVSHLLSRLPRPVLVV LRYLFTFLNHLAQYSDENMMDSYNLAVCFGPTLLPVPAGQDPVALQGRVNQLVQTLILQPAWVFPPTAMLPGPIYEKCMAPPSASCLGDGQLESLAGEPELELKTGTKAQEDDSEGVVEAVACFAYTG RTAQELTFQQGDTLRLYARASSDWWRGEHAGVRGLIPHKYITLSEGDEKQMTGSGLQAMGESLSHPESVLTLEFTNRLELGTPPEALGPSGHRRHCLVPTSPEQHVEMDKAVAQNMDSVFKELLGKAA VRQGHGLASTASPSLGTRNLKPLACSSFSKNKVFSRGPGAPVSPSVSHPQGPDSTRKPV hide sequence

RefSeq Acc Id:	XP_006229608 ⟸ XM_006229546
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AIK5 (UniProtKB/TrEMBL), A6KRU1 (UniProtKB/TrEMBL), Q8K4G7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAHGKLRRERGLQPEYEAQVKVMRGQLSEQLHCLELQGELRRDLLLELAEFMRRRAEVELEYS RGLDKLAERFTSRSGRLGGSSREQQSFRKEPTLLSPLHCWAMLLEHTRQQSRESATLSEVLAGPLAQRLSHIAEDVGRIVKKTKKTYHVYHLESMNAETKLREAERQEEKRSGKSALPTTTAASATTT ITIETELHRKGSLKKGGRLVEKRQAKFLEHKLKCTKARNEYLLSLASVNAAVSNYYLHDILDLMDCCDTGFHLALEQALRSYTAAESRTQTSHMQGLGSLEEALEALDPPGDKAKVLEVHAMAFCPPL RFDYQPHEGDEVAEIQVEMELRDEILPRAQNIQSRLDQKTIETEEVNKTLKATLQALLEVVASEDGDILDSLQASPSTESLKSTSSDPGTRQAGRRRNQQQETETFYITKLQEYLSGRSILAKLQAKH EKLQEAIQRGNKEEQETSSWTQCTERKFHKSHHPYPGSQCTQRLFGGDLEKFIQSTGQPVPLVVKSCIRFINLNGLQHEGIFRVSGAQARILEIRDAFERGEDPLVEGCTAHDLDSVAGVLKLYFRSL EPPLFPLDMFNELLASAELEVVGERVELVSHLLSRLPRPVLVVLRYLFTFLNHLAQYSDENMMDSYNLAVCFGPTLLPVPAGQDPVALQGRVNQLVQTLILQPAWVFPPTAMLPGPIYEKCMAPPSAS CLGDGQLESLAGEPELELKTGTKAQEDDSEGVVEAVACFAYTGRTAQELTFQQGDTLRLYARASSDWWRGEHAGVRGLIPHKYITLSEGDEKQMTGSGLQAMGESLSHPESVLTLEFTNRLELGTPPE ALGPSGHRRHCLVPTSPEQHVEMDKAVAQNMDSVFKELLGKAAVRQGHGLASTASPSLGTRNLKPLACSSFSKNKVFSRGPGAPVSPSVSHPQGPDSTRKPV hide sequence

Ensembl Acc Id:

ENSRNOP00000069460 ⟸ ENSRNOT00000085410

RefSeq Acc Id:	XP_038955379 ⟸ XM_039099451
- Peptide Label:	isoform X1
- UniProtKB:	Q8K4G7 (UniProtKB/TrEMBL)

Protein Domains

F-BAR Rho-GAP SH3

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JVF0-F1-model_v2	AlphaFold	A0A0G2JVF0	1-955	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13702053

Promoter ID:

EPDNEW_R12577

Type:

initiation region

Name:

Arhgap4_1

Description:

Rho GTPase activating protein 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	156,873,904 - 156,873,964	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-656	BioCyc
Ensembl Genes	ENSRNOG00000058545	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000085410	ENTREZGENE
	ENSRNOT00000085410.2	UniProtKB/TrEMBL
	ENSRNOT00000104884	ENTREZGENE
	ENSRNOT00000104884.1	UniProtKB/TrEMBL
	ENSRNOT00000109725	ENTREZGENE
	ENSRNOT00000109725.1	UniProtKB/TrEMBL
	ENSRNOT00000109822	ENTREZGENE
	ENSRNOT00000109822.1	UniProtKB/TrEMBL
	ENSRNOT00000117215	ENTREZGENE
	ENSRNOT00000117215.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.555.10	UniProtKB/TrEMBL
	1.20.1270.60	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
InterPro	AH/BAR-dom	UniProtKB/TrEMBL
	F_BAR	UniProtKB/TrEMBL
	FCH	UniProtKB/TrEMBL
	Rho_GTPase_activation_prot	UniProtKB/TrEMBL
	RhoGAP_dom	UniProtKB/TrEMBL
	SH3-like_dom	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
	SLIT-ROBO_RhoGAP	UniProtKB/TrEMBL
KEGG Report	rno:246249	UniProtKB/TrEMBL
NCBI Gene	246249	ENTREZGENE
PANTHER	SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN	UniProtKB/TrEMBL
Pfam	FCH	UniProtKB/TrEMBL
	RhoGAP	UniProtKB/TrEMBL
	SH3_1	UniProtKB/TrEMBL
PhenoGen	Arhgap4	PhenoGen
PROSITE	F_BAR	UniProtKB/TrEMBL
	RHOGAP	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000058545	RatGTEx
SMART	FCH	UniProtKB/TrEMBL
	RhoGAP	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
Superfamily-SCOP	Rho_GAP	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
	SSF103657	UniProtKB/TrEMBL
UniProt	A0A0G2JVF0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZY52	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AIK5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AN89_RAT	UniProtKB/TrEMBL
	A0A8I6GIQ7_RAT	UniProtKB/TrEMBL
	A6KRT9	ENTREZGENE, UniProtKB/TrEMBL
	A6KRU0	ENTREZGENE, UniProtKB/TrEMBL
	A6KRU1	ENTREZGENE, UniProtKB/TrEMBL
	A6KRU2_RAT	UniProtKB/TrEMBL
	A6KRU3_RAT	UniProtKB/TrEMBL
	Q8K4G7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Arhgap4	Rho GTPase activating protein 4			Symbol and Name status set to approved	1299863	APPROVED
2003-02-27	Arhgap4	Rho GTPase activating protein 4			Symbol and Name status set to provisional	70820	PROVISIONAL

Note Type	Note	Reference
gene_product	member of the Rho GTPase activating protein family	632235

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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