VSIR (V-set immunoregulatory receptor) - Rat Genome Database

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Gene: VSIR (V-set immunoregulatory receptor) Homo sapiens
Analyze
Symbol: VSIR
Name: V-set immunoregulatory receptor
RGD ID: 1605963
HGNC Page HGNC:30085
Description: Enables endopeptidase activator activity; enzyme binding activity; and identical protein binding activity. Involved in several processes, including negative regulation of cytokine production; positive regulation of collagen catabolic process; and regulation of T cell activation. Located in plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B7-H5; B7H5; C10orf54; chromosome 10 open reading frame 54; DD1alpha; Death Domain1alpha; Dies1; GI24; PD-1H; PDCD1 homolog; platelet receptor Gi24; PP2135; sisp-1; SISP1; stress induced secreted protein 1; stress-induced secreted protein-1; V-domain Ig suppressor of T cell activation; V-set domain-containing immunoregulatory receptor; V-type immunoglobulin domain-containing suppressor of T-cell activation; VISTA
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381071,747,556 - 71,773,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1071,747,556 - 71,773,520 (-)EnsemblGRCh38hg38GRCh38
GRCh371073,507,313 - 73,533,277 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361073,177,319 - 73,203,343 (-)NCBINCBI36Build 36hg18NCBI36
Celera1066,789,752 - 66,815,911 (-)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1067,501,145 - 67,527,120 (-)NCBIHuRef
CHM1_11073,789,445 - 73,815,328 (-)NCBICHM1_1
T2T-CHM13v2.01072,618,370 - 72,644,252 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12975309   PMID:14702039   PMID:15164054   PMID:15231748   PMID:15340161   PMID:15489334   PMID:15498874   PMID:16189514   PMID:17207965   PMID:20666777   PMID:21685187  
PMID:21873635   PMID:22424883   PMID:22488247   PMID:24691993   PMID:25279955   PMID:26228159   PMID:26760575   PMID:28236118   PMID:28258694   PMID:28776578   PMID:29203588   PMID:29216931  
PMID:29720116   PMID:29737375   PMID:29771768   PMID:30106102   PMID:30128738   PMID:30220083   PMID:30306644   PMID:30382166   PMID:30635425   PMID:31088847   PMID:31363159   PMID:31484064  
PMID:31537897   PMID:31645726   PMID:31781843   PMID:31883303   PMID:31901178   PMID:31940493   PMID:31949051   PMID:32060343   PMID:32117584   PMID:32205423   PMID:32266446   PMID:32296183  
PMID:32600443   PMID:32873829   PMID:33086339   PMID:33178206   PMID:33250890   PMID:33329552   PMID:33396515   PMID:33770210   PMID:33845483   PMID:33889438   PMID:34106206   PMID:34465822  
PMID:34660778   PMID:34728682   PMID:34752423   PMID:35056382   PMID:35187955   PMID:35521773   PMID:36042047   PMID:36450109   PMID:36849939   PMID:36862156   PMID:36944807   PMID:36968142  
PMID:37188624   PMID:37244388   PMID:37435070   PMID:37562584   PMID:37695550   PMID:37854605   PMID:37863710   PMID:37907049   PMID:38042220   PMID:38060328   PMID:38175754   PMID:38357542  


Genomics

Comparative Map Data
VSIR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381071,747,556 - 71,773,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1071,747,556 - 71,773,520 (-)EnsemblGRCh38hg38GRCh38
GRCh371073,507,313 - 73,533,277 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361073,177,319 - 73,203,343 (-)NCBINCBI36Build 36hg18NCBI36
Celera1066,789,752 - 66,815,911 (-)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1067,501,145 - 67,527,120 (-)NCBIHuRef
CHM1_11073,789,445 - 73,815,328 (-)NCBICHM1_1
T2T-CHM13v2.01072,618,370 - 72,644,252 (-)NCBIT2T-CHM13v2.0
Vsir
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391060,182,630 - 60,266,073 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1060,182,630 - 60,208,463 (+)EnsemblGRCm39 Ensembl
GRCm381060,346,851 - 60,430,294 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1060,346,851 - 60,372,684 (+)EnsemblGRCm38mm10GRCm38
MGSCv371059,809,599 - 59,835,432 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361059,742,261 - 59,768,041 (+)NCBIMGSCv36mm8
Celera1061,443,716 - 61,469,794 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1030.26NCBI
Vsir
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82028,824,493 - 28,850,175 (+)NCBIGRCr8
mRatBN7.22028,281,582 - 28,307,262 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2028,281,596 - 28,303,878 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2029,296,385 - 29,322,002 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02028,682,693 - 28,708,310 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02029,425,156 - 29,450,774 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02029,897,543 - 29,923,381 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2029,897,594 - 29,919,998 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02031,709,023 - 31,734,846 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42027,662,633 - 27,684,891 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2029,719,788 - 29,742,034 (+)NCBICelera
Cytogenetic Map20q11NCBI
Vsir
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543719,716,466 - 19,743,428 (+)NCBIChiLan1.0ChiLan1.0
VSIR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2883,898,498 - 83,924,301 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11083,900,069 - 83,929,613 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01068,218,230 - 68,243,687 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11070,742,062 - 70,767,613 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1070,742,062 - 70,767,613 (-)Ensemblpanpan1.1panPan2
VSIR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1422,504,888 - 22,530,702 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl422,459,363 - 22,530,687 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha422,640,897 - 22,668,397 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0422,779,509 - 22,807,057 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl422,783,285 - 22,805,226 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1422,685,865 - 22,713,397 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0422,884,409 - 22,911,939 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0423,238,917 - 23,266,458 (-)NCBIUU_Cfam_GSD_1.0
VSIR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1474,666,624 - 74,693,281 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11474,667,081 - 74,693,347 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21480,558,168 - 80,584,424 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VSIR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1959,516,012 - 59,538,628 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl959,516,073 - 59,542,242 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604820,159,695 - 20,182,168 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vsir
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247545,665,445 - 5,686,692 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247545,664,899 - 5,686,675 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in VSIR
12 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 10q21.2-22.2(chr10:62229688-74468143)x1 copy number loss See cases [RCV000052530] Chr10:62229688..74468143 [GRCh38]
Chr10:63989447..76227901 [GRCh37]
Chr10:63659453..75897907 [NCBI36]
Chr10:10q21.2-22.2
pathogenic
GRCh38/hg38 10q21.1-22.2(chr10:58436466-74415216)x1 copy number loss See cases [RCV000052511] Chr10:58436466..74415216 [GRCh38]
Chr10:60196226..76174974 [GRCh37]
Chr10:59866232..75844980 [NCBI36]
Chr10:10q21.1-22.2
pathogenic
GRCh38/hg38 10q11.21-22.2(chr10:42685306-73715908)x3 copy number gain See cases [RCV000134848] Chr10:42685306..73715908 [GRCh38]
Chr10:43180754..75475666 [GRCh37]
Chr10:42500760..75145672 [NCBI36]
Chr10:10q11.21-22.2
pathogenic
GRCh38/hg38 10q21.3-22.3(chr10:67196567-79422057)x3 copy number gain See cases [RCV000135438] Chr10:67196567..79422057 [GRCh38]
Chr10:68956325..81181813 [GRCh37]
Chr10:68626331..80851819 [NCBI36]
Chr10:10q21.3-22.3
pathogenic
GRCh38/hg38 10q21.3-22.2(chr10:63402579-75296099)x1 copy number loss See cases [RCV000136658] Chr10:63402579..75296099 [GRCh38]
Chr10:65162339..77055857 [GRCh37]
Chr10:64832345..76725863 [NCBI36]
Chr10:10q21.3-22.2
pathogenic|likely benign
GRCh38/hg38 10q11.23-23.2(chr10:50729367-87147204)x3 copy number gain See cases [RCV000138007] Chr10:50729367..87147204 [GRCh38]
Chr10:52489127..88906961 [GRCh37]
Chr10:52159133..88896941 [NCBI36]
Chr10:10q11.23-23.2
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:93297-135378918)x3 copy number gain See cases [RCV000448750] Chr10:93297..135378918 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143) copy number gain See cases [RCV000511389] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic|uncertain significance
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143)x3 copy number gain See cases [RCV000510861] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10q11.21-26.3(chr10:42347406-135534747)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626438] Chr10:42347406..135534747 [GRCh37]
Chr10:10q11.21-26.3
drug response
GRCh37/hg19 10q22.1(chr10:73321268-73554051)x1 copy number loss not provided [RCV000683208] Chr10:73321268..73554051 [GRCh37]
Chr10:10q22.1
uncertain significance
GRCh37/hg19 10q21.3-23.32(chr10:69040366-93194993)x3 copy number gain not provided [RCV000683289] Chr10:69040366..93194993 [GRCh37]
Chr10:10q21.3-23.32
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:73232-135524321)x3 copy number gain not provided [RCV000749464] Chr10:73232..135524321 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:98087-135477883)x3 copy number gain not provided [RCV000749465] Chr10:98087..135477883 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
NM_022153.2(VSIR):c.20T>C (p.Leu7Pro) single nucleotide variant Retinitis pigmentosa-deafness syndrome [RCV000988382] Chr10:71773420 [GRCh38]
Chr10:73533177 [GRCh37]
Chr10:10q22.1
benign
NM_022153.2(VSIR):c.561T>G (p.Asp187Glu) single nucleotide variant Retinitis pigmentosa-deafness syndrome [RCV000988381] Chr10:71760875 [GRCh38]
Chr10:73520632 [GRCh37]
Chr10:10q22.1
benign
NM_022153.2(VSIR):c.694C>T (p.Arg232Trp) single nucleotide variant See cases [RCV001197989] Chr10:71752985 [GRCh38]
Chr10:73512742 [GRCh37]
Chr10:10q22.1
uncertain significance
GRCh37/hg19 10q21.3-22.3(chr10:68735254-78885714) copy number loss not specified [RCV002052875] Chr10:68735254..78885714 [GRCh37]
Chr10:10q21.3-22.3
pathogenic
NC_000010.10:g.(?_73381150)_(73553170_?)del deletion not provided [RCV001963106] Chr10:73381150..73553170 [GRCh37]
Chr10:10q22.1
pathogenic
NC_000010.10:g.(?_73490206)_(73768229_?)dup duplication not provided [RCV001955739] Chr10:73490206..73768229 [GRCh37]
Chr10:10q22.1
uncertain significance
NM_022153.2(VSIR):c.839C>T (p.Ser280Leu) single nucleotide variant Autosomal recessive nonsyndromic hearing loss 12 [RCV002496182]|not provided [RCV003418418]|not specified [RCV002247932] Chr10:71751727 [GRCh38]
Chr10:73511484 [GRCh37]
Chr10:10q22.1
benign|likely benign
NC_000010.10:g.(?_73499381)_(73862745_?)dup duplication Sphingolipid activator protein 1 deficiency [RCV003113123] Chr10:73499381..73862745 [GRCh37]
Chr10:10q22.1
uncertain significance
NC_000010.10:g.(?_73464648)_(73768229_?)dup duplication not provided [RCV003111464] Chr10:73464648..73768229 [GRCh37]
Chr10:10q22.1
uncertain significance
GRCh37/hg19 10p14-q26.3(chr10:11138692-135427143) copy number gain Distal trisomy 10q [RCV003319593] Chr10:11138692..135427143 [GRCh37]
Chr10:10p14-q26.3
pathogenic
GRCh37/hg19 10p13-q26.3(chr10:12829206-135427143) copy number loss Distal 10q deletion syndrome [RCV003319583] Chr10:12829206..135427143 [GRCh37]
Chr10:10p13-q26.3
pathogenic
GRCh37/hg19 10q22.1(chr10:73321269-74612651)x1 copy number loss not provided [RCV003483098] Chr10:73321269..74612651 [GRCh37]
Chr10:10q22.1
uncertain significance
GRCh37/hg19 10q11.21-24.2(chr10:42709645-100834951)x3 copy number gain not provided [RCV003484798] Chr10:42709645..100834951 [GRCh37]
Chr10:10q11.21-24.2
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2775
Count of miRNA genes:1021
Interacting mature miRNAs:1294
Transcripts:ENST00000394957, ENST00000470317, ENST00000481568
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
PMC55343P6  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371569,328 - 569,431UniSTSGRCh37
GRCh37MT8,779 - 8,882UniSTSGRCh37
Build 361559,191 - 559,294RGDNCBI36
Cytogenetic Map5q31.3UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map3q29UniSTS
HuRef15,582 - 5,685UniSTS
STS-W72919  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371073,510,082 - 73,510,327UniSTSGRCh37
Build 361073,180,088 - 73,180,333RGDNCBI36
Celera1066,792,521 - 66,792,766RGD
Cytogenetic Map10q22.1UniSTS
HuRef1067,503,914 - 67,504,159UniSTS
GeneMap99-GB4 RH Map10370.67UniSTS
NCBI RH Map10900.9UniSTS
STS-R80211  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371073,510,760 - 73,510,896UniSTSGRCh37
Build 361073,180,766 - 73,180,902RGDNCBI36
Celera1066,793,199 - 66,793,335RGD
Cytogenetic Map10q22.1UniSTS
HuRef1067,504,592 - 67,504,728UniSTS
GeneMap99-GB4 RH Map10370.52UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 247 247
Medium 2319 2588 1140 256 1495 107 3395 1357 2732 256 1193 1480 165 1 1204 2084 5 2
Low 109 156 581 366 147 356 767 818 969 160 256 82 10 704 1
Below cutoff 8 2 1 42 1 176 17 15 2 8 39

Sequence


RefSeq Acc Id: ENST00000394957   ⟹   ENSP00000378409
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1071,747,556 - 71,773,520 (-)Ensembl
RefSeq Acc Id: ENST00000470317
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1071,750,916 - 71,757,630 (-)Ensembl
RefSeq Acc Id: ENST00000481568
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1071,760,482 - 71,761,944 (-)Ensembl
RefSeq Acc Id: NM_022153   ⟹   NP_071436
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381071,747,556 - 71,773,520 (-)NCBI
GRCh371073,507,313 - 73,533,337 (-)RGD
Build 361073,177,319 - 73,203,343 (-)NCBI Archive
Celera1066,789,752 - 66,815,911 (-)RGD
HuRef1067,501,145 - 67,527,120 (-)ENTREZGENE
CHM1_11073,789,445 - 73,815,328 (-)NCBI
T2T-CHM13v2.01072,618,370 - 72,644,252 (-)NCBI
Sequence:
RefSeq Acc Id: NP_071436   ⟸   NM_022153
- Peptide Label: precursor
- UniProtKB: Q8WUG3 (UniProtKB/Swiss-Prot),   Q6UXF3 (UniProtKB/Swiss-Prot),   A8MVH5 (UniProtKB/Swiss-Prot),   A4ZYV1 (UniProtKB/Swiss-Prot),   A1L0X9 (UniProtKB/Swiss-Prot),   Q8WYZ8 (UniProtKB/Swiss-Prot),   Q9H7M9 (UniProtKB/Swiss-Prot),   Q2TA85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000378409   ⟸   ENST00000394957
Protein Domains
Ig-like V-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9H7M9-F1-model_v2 AlphaFold Q9H7M9 1-311 view protein structure

Promoters
RGD ID:7217791
Promoter ID:EPDNEW_H14641
Type:initiation region
Name:VSIR_1
Description:V-set immunoregulatory receptor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381071,773,520 - 71,773,580EPDNEW
RGD ID:6787415
Promoter ID:HG_KWN:9961
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell
Transcripts:OTTHUMT00000048550
Position:
Human AssemblyChrPosition (strand)Source
Build 361073,187,086 - 73,187,586 (-)MPROMDB
RGD ID:6787414
Promoter ID:HG_KWN:9962
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_2Hour
Transcripts:OTTHUMT00000048549
Position:
Human AssemblyChrPosition (strand)Source
Build 361073,191,231 - 73,192,237 (-)MPROMDB
RGD ID:6787555
Promoter ID:HG_KWN:9963
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000394957,   ENST00000394960,   NM_022153,   UC001JSE.1,   UC001JSF.1,   UC009XQM.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361073,203,096 - 73,204,032 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:30085 AgrOrtholog
COSMIC VSIR COSMIC
Ensembl Genes ENSG00000107738 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000394957 ENTREZGENE
  ENST00000394957.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000107738 GTEx
HGNC ID HGNC:30085 ENTREZGENE
Human Proteome Map VSIR Human Proteome Map
InterPro Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot
  Ig_V-set UniProtKB/Swiss-Prot
  VISTA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:64115 UniProtKB/Swiss-Prot
NCBI Gene 64115 ENTREZGENE
OMIM 615608 OMIM
PANTHER PTHR44819 UniProtKB/Swiss-Prot
  V-TYPE IMMUNOGLOBULIN DOMAIN-CONTAINING SUPPRESSOR OF T-CELL ACTIVATION UniProtKB/Swiss-Prot
  V-TYPE IMMUNOGLOBULIN DOMAIN-CONTAINING SUPPRESSOR OF T-CELL ACTIVATION UniProtKB/TrEMBL
  V-TYPE IMMUNOGLOBULIN DOMAIN-CONTAINING SUPPRESSOR OF T-CELL ACTIVATION UniProtKB/TrEMBL
Pfam V-set UniProtKB/Swiss-Prot
PharmGKB PA142672307 PharmGKB
PROSITE IG_LIKE UniProtKB/Swiss-Prot
SMART SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP Immunoglobulin UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A1L0X9 ENTREZGENE
  A4ZYV1 ENTREZGENE
  A8MVH5 ENTREZGENE
  Q2TA85 ENTREZGENE, UniProtKB/TrEMBL
  Q6UXF3 ENTREZGENE
  Q8WUG3 ENTREZGENE
  Q8WYZ8 ENTREZGENE
  Q9H7M9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A1L0X9 UniProtKB/Swiss-Prot
  A4ZYV1 UniProtKB/Swiss-Prot
  A8MVH5 UniProtKB/Swiss-Prot
  Q6UXF3 UniProtKB/Swiss-Prot
  Q8WUG3 UniProtKB/Swiss-Prot
  Q8WYZ8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-11-29 VSIR  V-set immunoregulatory receptor  C10orf54  chromosome 10 open reading frame 54  Symbol and/or name change 5135510 APPROVED