Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Pacs2 | Rat | developmental and epileptic encephalopathy 66 | | ISO | PACS2 (Homo sapiens) | 7240710 | | OMIM | | |
|
Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Pacs2 | Rat | developmental and epileptic encephalopathy 66 | | ISO | PACS2 (Homo sapiens) | 7240710 | | OMIM | | |
|
|
|
|
|
|
# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:15692563 | PMID:15692567 | PMID:23455425 | PMID:24646523 | PMID:31210325 |
Pacs2 (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PACS2 (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Pacs2 (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Pacs2 (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PACS2 (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PACS2 (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Pacs2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PACS2 (Sus scrofa - pig) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PACS2 (Chlorocebus sabaeus - green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Pacs2 (Heterocephalus glaber - naked mole-rat) |
|
.
Variants in Pacs2
420 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH135260 |
|
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 2 | 33 | 38 | 22 | 18 | 22 | 8 | 11 | 74 | 35 | 41 | 11 | 8 |
Low | 1 | 10 | 19 | 19 | 1 | 19 | |||||||
Below cutoff |
RefSeq Transcripts | NM_001427329 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006225889 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006225891 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006240668 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017594524 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017594525 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017594526 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017603308 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017603309 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017603310 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017603311 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039113422 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039113423 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063262528 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063262529 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_005506363 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | FQ212280 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
JAXUCZ010000006 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000056880 ⟹ ENSRNOP00000053720 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000111416 ⟹ ENSRNOP00000088053 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000118407 ⟹ ENSRNOP00000087242 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | NM_001427329 ⟹ NP_001414258 | ||||||||
RefSeq Status: | VALIDATED | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_006240668 ⟹ XP_006240730 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
|
||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_017594524 ⟹ XP_017450013 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
|
||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_017594525 ⟹ XP_017450014 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
|
||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_017594526 ⟹ XP_017450015 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
|
||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_039113422 ⟹ XP_038969350 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_039113423 ⟹ XP_038969351 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_063262528 ⟹ XP_063118598 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063262529 ⟹ XP_063118599 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XR_005506363 | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
|
Protein RefSeqs | NP_001414258 | (Get FASTA) | NCBI Sequence Viewer |
XP_006240730 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017450013 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017450014 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017450015 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038969350 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038969351 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063118598 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063118599 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000053720 | ||
ENSRNOP00000053720.4 | |||
ENSRNOP00000087242.1 | |||
ENSRNOP00000088053.1 |
RefSeq Acc Id: | XP_006240730 ⟸ XM_006240668 |
- Peptide Label: | isoform X1 |
- UniProtKB: | D3ZJG4 (UniProtKB/TrEMBL), A0A8I6A754 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017450013 ⟸ XM_017594524 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8I6A754 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017450014 ⟸ XM_017594525 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A0A8I6A754 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017450015 ⟸ XM_017594526 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A0A8I6A831 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000053720 ⟸ ENSRNOT00000056880 |
RefSeq Acc Id: | XP_038969350 ⟸ XM_039113422 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A8I6A754 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038969351 ⟸ XM_039113423 |
- Peptide Label: | isoform X7 |
- UniProtKB: | A0A8I6A831 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | ENSRNOP00000087242 ⟸ ENSRNOT00000118407 |
RefSeq Acc Id: | ENSRNOP00000088053 ⟸ ENSRNOT00000111416 |
RefSeq Acc Id: | XP_063118599 ⟸ XM_063262529 |
- Peptide Label: | isoform X8 |
RefSeq Acc Id: | NP_001414258 ⟸ NM_001427329 |
RefSeq Acc Id: | XP_063118598 ⟸ XM_063262528 |
- Peptide Label: | isoform X6 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D3ZJG4-F1-model_v2 | AlphaFold | D3ZJG4 | 1-870 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13694864 | ||||||||
Promoter ID: | EPDNEW_R5384 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Pacs2_1 | ||||||||
Description: | phosphofurin acidic cluster sorting protein 2 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
|
Database | Acc Id | Source(s) |
AGR Gene | RGD:1597262 | AgrOrtholog |
BioCyc Gene | G2FUF-35766 | BioCyc |
Ensembl Genes | ENSRNOG00000014744 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000056880.6 | UniProtKB/TrEMBL |
ENSRNOT00000111416.1 | UniProtKB/TrEMBL | |
ENSRNOT00000118407.1 | UniProtKB/TrEMBL | |
InterPro | Phosphofurin_acidic_CSp-1 | UniProtKB/TrEMBL |
KEGG Report | rno:691631 | UniProtKB/TrEMBL |
NCBI Gene | 691631 | ENTREZGENE |
PANTHER | PHOSPHOFURIN ACIDIC CLUSTER SORTING PROTEIN 2 | UniProtKB/TrEMBL |
PTHR13280 | UniProtKB/TrEMBL | |
Pfam | Pacs-1 | UniProtKB/TrEMBL |
PhenoGen | Pacs2 | PhenoGen |
RatGTEx | ENSRNOG00000014744 | RatGTEx |
UniProt | A0A8I6A754 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I6A831 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZJG4 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2012-10-02 | Pacs2 | phosphofurin acidic cluster sorting protein 2 | LOC691631 | hypothetical protein LOC691631 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-01-09 | LOC691631 | hypothetical protein LOC691631 | LOC686271 | hypothetical protein LOC686271 | Data merged from RGD:1584293 | 1643240 | APPROVED |
2006-11-20 | LOC691631 | hypothetical protein LOC691631 | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2006-11-19 | LOC686271 | hypothetical protein LOC686271 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |