Bpifb5 (BPI fold containing family B, member 5) - Rat Genome Database

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Gene: Bpifb5 (BPI fold containing family B, member 5) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Bpifb5
Name: BPI fold containing family B, member 5
RGD ID: 1596031
Description: Predicted to enable lipid binding activity. Predicted to be located in extracellular region.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hypothetical protein LOC690479; LOC690479; uncharacterized protein Bpifb5
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83163,169,860 - 163,188,492 (+)NCBIGRCr8
mRatBN7.23142,706,316 - 142,728,330 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3142,709,530 - 142,728,344 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03149,706,004 - 149,724,469 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3149,706,075 - 149,724,352 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03156,082,352 - 156,100,799 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43144,638,920 - 144,652,523 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3141,450,156 - 141,468,630 (+)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bpifb5Ratextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
Bpifb5Ratextracellular region located_inIEAUniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bpifb5Ratlipid binding enablesIEAInterPro:IPR017942 and InterPro:IPR0179431600115GO_REF:0000002InterProGO_REF:0000002


#
Reference Title
Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Bpifb5
133 total Variants


Assembly: Rnor_5.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
3 156098592 156098593 G A snv ZF (KyushuU) View more Information

Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:78
Interacting mature miRNAs:80
Transcripts:ENSRNOT00000034798
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 33 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141339236155617360Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat

1 to 10 of 33 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
2 2 32 37 35 38 8 14 8 2 92 59 25 21 53 30


RefSeq Transcripts XM_001074561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002726273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000034798   ⟹   ENSRNOP00000032123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3142,709,530 - 142,728,344 (+)Ensembl
Rnor_6.0 Ensembl3149,706,075 - 149,724,352 (+)Ensembl
RefSeq Acc Id: XM_001074561   ⟹   XP_001074561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83163,169,860 - 163,188,492 (+)NCBI
mRatBN7.23142,706,316 - 142,728,330 (+)NCBI
Rnor_6.03149,706,004 - 149,724,469 (+)NCBI
Rnor_5.03156,082,352 - 156,100,799 (+)NCBI
RGSC_v3.43144,638,920 - 144,652,523 (+)RGD
Sequence:
Protein RefSeqs XP_001074561 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000032123
  ENSRNOP00000032123.5
RefSeq Acc Id: XP_001074561   ⟸   XM_001074561
- UniProtKB: D3ZTZ5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000032123   ⟸   ENSRNOT00000034798
Lipid-binding serum glycoprotein N-terminal

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZTZ5-F1-model_v2 AlphaFold D3ZTZ5 1-492 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 17 of 17 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-47186 BioCyc
Ensembl Genes ENSRNOG00000025238 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000034798 ENTREZGENE
  ENSRNOT00000034798.6 UniProtKB/TrEMBL
Gene3D-CATH Bactericidal permeability-increasing protein, domain 1 UniProtKB/TrEMBL
  Bactericidal permeability-increasing protein, domain 2 UniProtKB/TrEMBL
InterPro Bactericidal_perm-incr_a/b_dom UniProtKB/TrEMBL
  BPI_fold-BPI/LBP UniProtKB/TrEMBL
  Lipid-bd_serum_glycop_N UniProtKB/TrEMBL
NCBI Gene 690479 ENTREZGENE
PANTHER BPI FOLD-CONTAINING FAMILY B MEMBER 4-RELATED UniProtKB/TrEMBL
  BPI FOLD-CONTAINING FAMILY B, MEMBER 5 UniProtKB/TrEMBL
Pfam LBP_BPI_CETP UniProtKB/TrEMBL
PhenoGen Bpifb5 PhenoGen
RatGTEx ENSRNOG00000025238 RatGTEx
Superfamily-SCOP SSF55394 UniProtKB/TrEMBL
UniProt D3ZTZ5 ENTREZGENE, UniProtKB/TrEMBL
1 to 17 of 17 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-16 Bpifb5  BPI fold containing family B, member 5  LOC690479  hypothetical protein LOC690479  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC690479  hypothetical protein LOC690479  LOC683134  hypothetical protein LOC683134  Data merged from RGD:1590432 1643240 APPROVED
2006-11-20 LOC690479  hypothetical protein LOC690479      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC683134  hypothetical protein LOC683134      Symbol and Name status set to provisional 70820 PROVISIONAL