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Gene: Snrnp48 (small nuclear ribonucleoprotein U11/U12 subunit 48) Rattus norvegicus

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Symbol:

Snrnp48

Name:

small nuclear ribonucleoprotein U11/U12 subunit 48

RGD ID:

1309020

Description:

Predicted to enable zinc ion binding activity. Predicted to be part of U12-type spliceosomal complex. Predicted to be active in cytosol and nucleoplasm. Orthologous to human SNRNP48 (small nuclear ribonucleoprotein U11/U12 subunit 48); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; C60 fullerene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC291060; RGD1309020; similar to RIKEN cDNA 6530403A03; small nuclear ribonucleoprotein 48 (U11/U12); small nuclear ribonucleoprotein 48k (U11/U12); U11/U12 small nuclear ribonucleoprotein 48 kDa protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	26,801,818 - 26,821,605 (-)	NCBI		GRCr8
mRatBN7.2	17	26,596,266 - 26,616,058 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	26,596,275 - 26,616,040 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	26,454,374 - 26,474,288 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	28,057,965 - 28,077,873 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	26,402,639 - 26,422,467 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	27,243,732 - 27,279,271 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	27,243,781 - 27,279,260 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	29,158,965 - 29,194,327 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	32,820,173 - 32,840,752 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	32,823,012 - 32,843,576 (-)	NCBI
Celera	17	26,230,361 - 26,250,165 (-)	NCBI		Celera
Cytogenetic Map	17	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snrnp48	Rat	arrhythmogenic right ventricular dysplasia 8		ISO	SNRNP48 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Arrhythmogenic right ventricular cardiomyopathy and type 8	ClinVar	PMID:28492532
Snrnp48	Rat	Carvajal syndrome		ISO	SNRNP48 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Carvajal syndrome	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snrnp48	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	Snrnp48 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of SNRNP48 mRNA	CTD	PMID:36331819
Snrnp48	Rat	17beta-estradiol	decreases expression	ISO	Snrnp48 (Mus musculus)	6480464	Estradiol results in decreased expression of SNRNP48 mRNA	CTD	PMID:39298647
Snrnp48	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of SNRNP48 mRNA	CTD	PMID:21215274
Snrnp48	Rat	4-hydroxyphenyl retinamide	increases expression	ISO	Snrnp48 (Mus musculus)	6480464	Fenretinide results in increased expression of SNRNP48 mRNA	CTD	PMID:28973697
Snrnp48	Rat	5-fluorouracil	decreases expression	ISO	SNRNP48 (Homo sapiens)	6480464	Fluorouracil results in decreased expression of SNRNP48 mRNA	CTD	PMID:16510598
Snrnp48	Rat	aflatoxin B1	increases methylation	ISO	SNRNP48 (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of SNRNP48 intron	CTD	PMID:30157460
Snrnp48	Rat	all-trans-retinoic acid	decreases expression	ISO	SNRNP48 (Homo sapiens)	6480464	Tretinoin results in decreased expression of SNRNP48 mRNA	CTD	PMID:33167477
Snrnp48	Rat	arsenite(3-)	multiple interactions	ISO	SNRNP48 (Homo sapiens)	6480464	arsenite promotes the reaction [G3BP1 protein binds to SNRNP48 mRNA]	CTD	PMID:32406909
Snrnp48	Rat	benzo[a]pyrene	affects methylation	ISO	SNRNP48 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of SNRNP48 promoter	CTD	PMID:27901495
Snrnp48	Rat	benzo[a]pyrene	decreases methylation	ISO	SNRNP48 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of SNRNP48 3' UTR	CTD	PMID:27901495
Snrnp48	Rat	benzo[a]pyrene diol epoxide I	decreases expression	ISO	SNRNP48 (Homo sapiens)	6480464	7 more ...	CTD	PMID:20018196
Snrnp48	Rat	benzo[a]pyrene diol epoxide I	increases expression	ISO	SNRNP48 (Homo sapiens)	6480464	7 more ...	CTD	PMID:26238291
Snrnp48	Rat	bis(2-ethylhexyl) phthalate	increases expression	ISO	Snrnp48 (Mus musculus)	6480464	Diethylhexyl Phthalate results in increased expression of SNRNP48 mRNA	CTD	PMID:33754040
Snrnp48	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of SNRNP48 mRNA	CTD	PMID:25181051 more ...
Snrnp48	Rat	bisphenol A	decreases expression	ISO	Snrnp48 (Mus musculus)	6480464	bisphenol A results in decreased expression of SNRNP48 mRNA	CTD	PMID:33221593
Snrnp48	Rat	bisphenol AF	increases expression	ISO	SNRNP48 (Homo sapiens)	6480464	bisphenol AF results in increased expression of SNRNP48 mRNA	CTD	PMID:25912373
Snrnp48	Rat	bortezomib	increases expression	ISO	SNRNP48 (Homo sapiens)	6480464	Bortezomib results in increased expression of SNRNP48 mRNA	CTD	PMID:20977926
Snrnp48	Rat	C60 fullerene	increases expression	EXP		6480464	fullerene C60 results in increased expression of SNRNP48 mRNA	CTD	PMID:19167457
Snrnp48	Rat	cadmium dichloride	increases expression	EXP		6480464	Cadmium Chloride results in increased expression of SNRNP48 mRNA	CTD	PMID:33453195
Snrnp48	Rat	carbamazepine	affects expression	ISO	SNRNP48 (Homo sapiens)	6480464	Carbamazepine affects the expression of SNRNP48 mRNA	CTD	PMID:25979313
Snrnp48	Rat	carbon nanotube	decreases expression	ISO	Snrnp48 (Mus musculus)	6480464	Nanotubes and Carbon results in decreased expression of SNRNP48 mRNA	CTD	PMID:25620056
Snrnp48	Rat	chloroprene	increases expression	EXP		6480464	Chloroprene results in increased expression of SNRNP48 mRNA	CTD	PMID:23125180
Snrnp48	Rat	Cuprizon	decreases expression	EXP		6480464	Cuprizone results in decreased expression of SNRNP48 mRNA	CTD	PMID:26577399
Snrnp48	Rat	Cuprizon	affects expression	EXP		6480464	Cuprizone affects the expression of SNRNP48 mRNA	CTD	PMID:27523638
Snrnp48	Rat	cyclosporin A	decreases expression	ISO	Snrnp48 (Mus musculus)	6480464	Cyclosporine results in decreased expression of SNRNP48 mRNA	CTD	PMID:19770486
Snrnp48	Rat	cyclosporin A	decreases expression	ISO	SNRNP48 (Homo sapiens)	6480464	Cyclosporine results in decreased expression of SNRNP48 mRNA	CTD	PMID:20106945 and PMID:21632981
Snrnp48	Rat	ethanol	affects expression	ISO	Snrnp48 (Mus musculus)	6480464	Ethanol affects the expression of SNRNP48 mRNA	CTD	PMID:30319688
Snrnp48	Rat	ethyl methanesulfonate	increases expression	ISO	SNRNP48 (Homo sapiens)	6480464	Ethyl Methanesulfonate results in increased expression of SNRNP48 mRNA	CTD	PMID:23649840
Snrnp48	Rat	fenvalerate	increases expression	EXP		6480464	fenvalerate results in increased expression of SNRNP48 mRNA	CTD	PMID:30307764
Snrnp48	Rat	flutamide	increases expression	EXP		6480464	Flutamide results in increased expression of SNRNP48 mRNA	CTD	PMID:24793618
Snrnp48	Rat	formaldehyde	increases expression	ISO	SNRNP48 (Homo sapiens)	6480464	Formaldehyde results in increased expression of SNRNP48 mRNA	CTD	PMID:23649840
Snrnp48	Rat	furan	increases methylation	EXP		6480464	furan results in increased methylation of SNRNP48 gene	CTD	PMID:22079235
Snrnp48	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of SNRNP48 mRNA	CTD	PMID:33387578
Snrnp48	Rat	methapyrilene	increases expression	EXP		6480464	Methapyrilene results in increased expression of SNRNP48 mRNA	CTD	PMID:30467583
Snrnp48	Rat	methyl methanesulfonate	increases expression	ISO	SNRNP48 (Homo sapiens)	6480464	Methyl Methanesulfonate results in increased expression of SNRNP48 mRNA	CTD	PMID:23649840
Snrnp48	Rat	methylmercury chloride	increases expression	ISO	SNRNP48 (Homo sapiens)	6480464	methylmercuric chloride results in increased expression of SNRNP48 mRNA	CTD	PMID:28001369
Snrnp48	Rat	perfluorooctane-1-sulfonic acid	decreases expression	ISO	SNRNP48 (Homo sapiens)	6480464	perfluorooctane sulfonic acid results in decreased expression of SNRNP48 mRNA	CTD	PMID:27153767
Snrnp48	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Snrnp48 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of SNRNP48 mRNA and [perfluorooctane sulfonic acid co-treated with Pectins] results in increased expression of SNRNP48 mRNA	CTD	PMID:36331819
Snrnp48	Rat	phenobarbital	affects expression	ISO	Snrnp48 (Mus musculus)	6480464	Phenobarbital affects the expression of SNRNP48 mRNA	CTD	PMID:23091169
Snrnp48	Rat	resveratrol	decreases expression	EXP		6480464	resveratrol results in decreased expression of SNRNP48 mRNA	CTD	PMID:25905778
Snrnp48	Rat	sulforaphane	decreases expression	ISO	Snrnp48 (Mus musculus)	6480464	sulforaphane results in decreased expression of SNRNP48 mRNA	CTD	PMID:30529165
Snrnp48	Rat	trichloroethene	decreases expression	EXP		6480464	Trichloroethylene results in decreased expression of SNRNP48 mRNA	CTD	PMID:33387578
Snrnp48	Rat	trichostatin A	affects expression	ISO	SNRNP48 (Homo sapiens)	6480464	trichostatin A affects the expression of SNRNP48 mRNA	CTD	PMID:28542535
Snrnp48	Rat	trovafloxacin	increases expression	ISO	Snrnp48 (Mus musculus)	6480464	trovafloxacin results in increased expression of SNRNP48 mRNA	CTD	PMID:35537566
Snrnp48	Rat	valdecoxib	increases expression	EXP		6480464	valdecoxib results in increased expression of SNRNP48 mRNA	CTD	PMID:24136188
Snrnp48	Rat	valproic acid	affects expression	ISO	Snrnp48 (Mus musculus)	6480464	Valproic Acid affects the expression of SNRNP48 mRNA	CTD	PMID:17292431
Snrnp48	Rat	valproic acid	decreases expression	ISO	SNRNP48 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of SNRNP48 mRNA	CTD	PMID:23179753 more ...
Snrnp48	Rat	valproic acid	increases expression	ISO	SNRNP48 (Homo sapiens)	6480464	Valproic Acid results in increased expression of SNRNP48 mRNA	CTD	PMID:29154799
Snrnp48	Rat	versicolorin A	increases expression	ISO	SNRNP48 (Homo sapiens)	6480464	versicolorin A results in increased expression of SNRNP48 mRNA	CTD	PMID:32106047
Snrnp48	Rat	vinclozolin	increases expression	EXP		6480464	vinclozolin results in increased expression of SNRNP48 mRNA	CTD	PMID:23034163

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snrnp48	Rat	cytosol	located_in	ISO	SNRNP48 (Homo sapiens) and UniProtKB:Q6IEG0-1	1624291		RGD	GO_REF:0000052
Snrnp48	Rat	cytosol	located_in	IEA	UniProtKB:Q6IEG0 and ensembl:ENSP00000339834	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Snrnp48	Rat	cytosol	is_active_in	IBA	PANTHER:PTN002328307 and UniProtKB:Q6IEG0	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Snrnp48	Rat	nucleoplasm	located_in	ISO	SNRNP48 (Homo sapiens) and UniProtKB:Q6IEG0-1	1624291		RGD	GO_REF:0000052
Snrnp48	Rat	nucleoplasm	located_in	IEA	UniProtKB:Q6IEG0 and ensembl:ENSP00000339834	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Snrnp48	Rat	nucleoplasm	is_active_in	IBA	PANTHER:PTN002328307 and UniProtKB:Q6IEG0	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Snrnp48	Rat	U12-type spliceosomal complex	part_of	ISO	SNRNP48 (Homo sapiens)	1624291	PMID:15146077	RGD	PMID:15146077
Snrnp48	Rat	U12-type spliceosomal complex	part_of	IEA	UniProtKB:Q6IEG0 and ensembl:ENSP00000339834	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Snrnp48	Rat	U12-type spliceosomal complex	part_of	IBA	PANTHER:PTN002328307 and UniProtKB:Q6IEG0	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snrnp48	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Snrnp48	Rat	protein binding	enables	ISO	SNRNP48 (Homo sapiens)	1624291	UniProtKB:P57075-2 more ...	RGD	PMID:32296183 and PMID:32814053
Snrnp48	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:15146077

Snrnp48
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	26,801,818 - 26,821,605 (-)	NCBI		GRCr8
mRatBN7.2	17	26,596,266 - 26,616,058 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	26,596,275 - 26,616,040 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	26,454,374 - 26,474,288 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	28,057,965 - 28,077,873 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	26,402,639 - 26,422,467 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	27,243,732 - 27,279,271 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	27,243,781 - 27,279,260 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	29,158,965 - 29,194,327 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	32,820,173 - 32,840,752 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	32,823,012 - 32,843,576 (-)	NCBI
Celera	17	26,230,361 - 26,250,165 (-)	NCBI		Celera
Cytogenetic Map	17	p12	NCBI

SNRNP48
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	7,590,198 - 7,611,967 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	7,590,198 - 7,611,967 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	7,590,431 - 7,612,200 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	7,535,431 - 7,557,199 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	7,535,430 - 7,557,090	NCBI
Celera	6	8,820,198 - 8,841,965 (+)	NCBI		Celera
Cytogenetic Map	6	p24.3	NCBI
HuRef	6	7,467,904 - 7,489,633 (+)	NCBI		HuRef
CHM1_1	6	7,592,592 - 7,614,360 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	7,459,234 - 7,481,028 (+)	NCBI		T2T-CHM13v2.0

Snrnp48
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	38,388,880 - 38,411,639 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	38,388,914 - 38,411,641 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	38,204,914 - 38,227,663 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	38,204,938 - 38,227,665 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	38,296,808 - 38,319,532 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	38,212,405 - 38,235,129 (+)	NCBI		MGSCv36	mm8
Celera	13	39,319,749 - 39,342,492 (+)	NCBI		Celera
Cytogenetic Map	13	A3.3	NCBI
cM Map	13	18.04	NCBI

Snrnp48
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955465	6,336,209 - 6,353,569 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955465	6,339,362 - 6,353,563 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNRNP48
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	22,229,964 - 22,253,928 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	18,226,844 - 18,250,700 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	7,430,029 - 7,451,750 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	7,712,986 - 7,734,669 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	7,712,986 - 7,734,669 (+)	Ensembl	panpan1.1		panPan2

SNRNP48
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	7,529,115 - 7,546,483 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	7,529,159 - 7,545,620 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	7,532,684 - 7,550,530 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	7,612,043 - 7,629,839 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	7,611,891 - 7,629,477 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	7,465,089 - 7,482,892 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	7,490,744 - 7,508,567 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	8,823,390 - 8,841,241 (+)	NCBI		UU_Cfam_GSD_1.0

Snrnp48
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	16,739,162 - 16,756,195 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936534	5,007,360 - 5,025,272 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936534	5,007,362 - 5,025,187 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNRNP48
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	4,919,351 - 4,936,036 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	4,919,343 - 4,940,359 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	5,024,693 - 5,040,424 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNRNP48
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	64,588,401 - 64,607,323 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	64,586,891 - 64,607,286 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	7,544,993 - 7,565,286 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Snrnp48
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	18,017,432 - 18,032,861 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624756	18,018,442 - 18,032,773 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Snrnp48
78 total Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
17	29189422	29189423	G	A	snv	LEC/Tj (KyushuU)	View more Information

Predicted Target Of

	Summary Value
Count of predictions:	19
Count of miRNA genes:	17
Interacting mature miRNAs:	19
Transcripts:	ENSRNOT00000018508
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
2300002	Iddm36	Insulin dependent diabetes mellitus QTL 36	1.98		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	9991286	40540197	Rat
631499	Stl1	Serum triglyceride level QTL 1	3.6		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	3271398	27389946	Rat
2293664	Bmd28	Bone mineral density QTL 28	5.1	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	17	4354487	27028127	Rat
1354640	Scl32	Serum cholesterol level QTL 32	5.4		blood HDL cholesterol amount (VT:0000184)	blood high density lipoprotein cholesterol level (CMO:0000052)	17	15781592	60781592	Rat
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2115149	34551001	Rat
70157	Niddm32	Non-insulin dependent diabetes mellitus QTL 32	4.34		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	22454924	50909196	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
1354628	Stl13	Serum triglyceride level QTL 13	3.8		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	21293039	60781592	Rat
10401807	Kidm52	Kidney mass QTL 52			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	1	31701463	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4528038	49528038	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23080567	59555013	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	68653184	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24184890	79524188	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
1354613	Kidm14	Kidney mass QTL 14	6.2		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	17	4299130	35837242	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15330613	55836425	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4528038	49528038	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23653184	68653184	Rat
70184	BpQTLcluster14	Blood pressure QTL cluster 14	3.38		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	1	31990913	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23653184	68653184	Rat
2303561	Bw91	Body weight QTL 91	2		body mass (VT:0001259)	body weight (CMO:0000012)	17	8868462	53868462	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23653184	70974005	Rat
631207	Niddm41	Non-insulin dependent diabetes mellitus QTL 41			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	1	37830672	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23653184	68653184	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23653184	68653184	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	24599340	69599340	Rat
1354596	Bw32	Body weight QTL 32	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	17	4299130	60781592	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
2293648	Bmd31	Bone mineral density QTL 31	4.5	0.0001	femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	17	4354487	27028127	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	57246843	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	60781592	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			23930421	79524188	Rat
1354659	Scl68	Serum cholesterol level QTL 68	3.9		blood VLDL cholesterol amount (VT:0005144)	blood very low density lipoprotein cholesterol level (CMO:0000648)	17	15781592	60781592	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001106107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC088167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018508 ⟹ ENSRNOP00000018508

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	26,596,275 - 26,616,026 (-)	Ensembl
Rnor_6.0 Ensembl	17	27,243,781 - 27,279,260 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110730 ⟹ ENSRNOP00000085198

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	26,598,684 - 26,616,040 (-)	Ensembl

RefSeq Acc Id:

NM_001106107 ⟹ NP_001099577

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	26,801,819 - 26,821,592 (-)	NCBI
mRatBN7.2	17	26,596,267 - 26,616,040 (-)	NCBI
Rnor_6.0	17	27,243,780 - 27,279,250 (-)	NCBI
Rnor_5.0	17	29,158,965 - 29,194,327 (-)	NCBI
RGSC_v3.4	17	32,820,173 - 32,840,752 (-)	RGD
Celera	17	26,230,361 - 26,250,165 (-)	RGD

Sequence:

show sequence

ACCACTTCCTGTCTGAGGTGAGCTGCGATCATGGAGGCCGAGCCTCCTCCCTTGGAAGAGCGGCGTCGGCTGCAGGAGGAGCTCAGCGAGTTCGTGGAGAGCTGCTGCAGGACACTGGAGGAGGTGAC
GGCGTCCCTGGGATGGAGCCTGGATCACCTGGACCCCGGGGACGAGGTGACGGCCGAGGATGAAATCACCATATGCCCTTATGATTCCAATCATCGCATGCCTAAATCATCACTACCAAAGCACATGG
AATCTTGCAGACTGAGGAAACTGGGATATACCAAAGAGGAAGAGGATGAAATGTACAATCCTACTTTTTTCTATGAAAATTTGAAGATTCCTTCAGTTACTTTGAATAAGGACTCACAGTTCCAGATA
ATTAAACAAGCTAGGACTACAGCTGGGAAAGATGGTGACTGTTATAGCCAAAGACTGTATTCTTCAGCGCCTGTTGAAGTTCCTCTGAATCACAAACGATCTGTTTGTGACCTCACACAAGCCGATCG
CCTTGCCCTTTATGATTTCGTCATTGAGGAAACAAAGAAAAAGCGCTCTGCTCCTCAAGTCATCGAAAATGACAGTGACCTGTTTGTAGATTTGGCTGCTAAAGTCAATCAAGATAATAGCCGAAAAA
GTCCAAAATCTTACCTGGAAATCCTGGCAGAAGTGAGAGATTACAAAAGGAGACGCCAGTCCTACAGAGCTAAGAATGTCCATATAACCAAAAAGTCATACACCGAGGTAATTCGGGATGTGATAAAG
GTGCACATGGAAGAGCTCAGTAACCATTGGCAAGAAGAGCAGGAAAGGGCAGAAGATGGTGCTGAGAAGAATGAGGAAAGGCGATCGGCTTCGGTAGATTCACGGCAGTCTGGTGGGAGTTATTTGGA
TGTTGAAAGTTCACGGCATAGAAGGGCTCGGAGTAGGAGCCCACACAAACGAAAAAGAAATAAAGATAAAAGTTCTGACTCAAGAAGAAGGAAAGAAAGGGATGGAGAAAGACATCATAGTCATAAAA
GAAGAAAGCAAAAAATATAATCAGATTGTAAATGCATTAATTATGCTTATGAAATAAATATGCTGATATTTAATTATTATCTTTGCATAGGAGAAAATGGCTGTTAGGGTAGTGTAATGCTTATTACT
TTAATAAATTCTTGAACCCACGGGTCAAAATTGTACCTT

hide sequence

RefSeq Acc Id:

XM_006253787 ⟹ XP_006253849

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	26,801,818 - 26,821,602 (-)	NCBI
mRatBN7.2	17	26,598,772 - 26,616,056 (-)	NCBI
Rnor_6.0	17	27,246,628 - 27,279,271 (-)	NCBI
Rnor_5.0	17	29,158,965 - 29,194,327 (-)	NCBI

Sequence:

show sequence

CCGTGCGCTCACAGCAGTTCTACCACTTCCTGTCTGAGGTGAGCTGCGATCATGGAGGCCGAGC
CTCCTCCCTTGGAAGAGCGGCGTCGGCTGCAGGAGGAGCTCAGCGAGTTCGTGGAGAGCTGCTGCAGGACACTGGAGGAGGTGACGGCGTCCCTGGGATGGAGCCTGGATCACCTGGACCCCGGGGAC
GAGGTGACGGCCGAGGATGAAATCACCATATGCCCTTATGATTCCAATCATCGCATGCCTAAATCATCACTACCAAAGCACATGGAATCTTGCAGACTGAGGAAACTGGGATATACCAAAGAGGAAGA
GGATGAAATGTACAATCCTACTTTTTTCTATGAAAATTTGAAGATTCCTTCAGTTACTTTGAATAAGGACTCACAGTTCCAGATAATTAAACAAGCTAGGACTACAGCTGGGAAAGATGGTGACTGTT
ATAGCCAAAGACTGTATTCTTCAGCGCCTGTTGAAGTTCCTCTGAATCACAAACGATCTGTTTGTGACCTCACACAAGCCGATCGCCTTGCCCTTTATGATTTCGTCATTGAGGAAACAAAGAAAAAG
CGCTCTGCTCCTCAAGTCATCGAAAATGACAGTGACCTGTTTGTAGATTTGGCTGCTAAAGTCAATCAAGATAATAGCCGAAAAAGTCCAAAATCTTACCTGGAAATCCTGGCAGAAGTGAGAGATTA
CAAAAGGAGACGCCAGTCCTACAGAGCTAAGAATGTCCATATAACCAAAAAGTCATACACCGAGGTAATTCGGGATGTGATAAAGGTGCACATGGAAGAGCTCAGTAACCATTGGCAAGAAGAGCAGG
AAAGGGCAGAAGATGGTGCTGAGAAGAATGAGGAAAGGCGATCGGCTTCGGTAGATTCACGGCAGTCTGGTGGGAGTTATTTGGATGTTGAAAGTTCACGGCATAGAAGGGCTCGGAGTAGGAGCCCA
CACAAACGAAAAAGAAATAAAGATAAAAGTTCTGACTCAAGAAGAAGGAAAGAAAGGCGAGTGTGTGCCCCCGAGGTATCCAGCATTGTTGACTCTGTTGTAGAATGCAGAAGAGTAAGTTATTGGAG
TAAGTTAAGGTAGGGAAGGAATTCATGGGATTCTTCACATTCACCATGTTCAGCTCACAGACTACCATTTAGTGATGGAGTTCCTAGTTCTGTGTGCATGAAAGGCTGCGCCCCACCCATCCTTTGAG
ACATTGGGAATGGAACCTAGAGGCAAGCGAGCTGTAACTTTAGCTCTTTTCTCCTCTCTTCTTGTCATTAATTTATTTATTCACTTTACATCTGATCACAGCACCCCCTTCTGGTTCCCCCTCACGAA
GCTCCTCTCCCACCCTGGCACCTCAAGTTACTGAAGGACTAGGCACATCCTCTCCCACTGAGGCCAGACAAGGCAGCCCAGTTAGGGGGCCAGGATCCATAGGCAGGCAACAGAGTCAGGGACAGTCC
CTGCTCCAGTTGTTTGGATCCACATGAAGACTAAGCTGCACGTATTTTGGGTGGGGTGGGGGACCTAGGCCTGGCCCATGCTTGCTCTTTGGTTAATGGTTCAGGCTTTGGGAGCCTCCAAGAGCCTA
GGTTAGTTGCCTCTGTCAGTCTTCTTGTGACATCTCTGTCCCGTCCAGCTCCCTCAGTCCTTCCCCACTTCTTCACAAAATTCCCCAAGCTCTGTCTAATGTTAGGCTGTGGGTCTCTGCACCTGTTT
CTGTCAGTTGCTGCATAGAGCCTCTCAAAGGAGAGTTATGTTAGGTTCCTGTCTGAAAGCATAATGGAATAGCTACAATTAATAAGGAAAATGGTTTGGTGCTTGCCCATGGAAGGGTCTCAAGTCGG
GTCAACCATTGGTTGGCCATTCCCTCAGTCTCTGCTGTCTCTGTCCCTGCACATCTTGTTGGCAGGACACATTTTGGGTTTAAGGTTTTGTGGGTGGGTTGGTATCCTTATCCCTCCACTGGAGTCCT
GCCCAGCTACAGGAAATGGCCACCTCAGGCTCCATATCCCCCACTGCTATGAGTCTCAACTAGAGTCACCCCCATAGACTCCCTGGGGCCTCTCTTCCCTGTCCCAGGTCTTTGGCGTGTCCTAGAGA
GTCGCTCCCCCAAGTCCCATGATGGTTTTTGTTCTCTCTCCCATTCTCCATACACTGATCTTTCTCCATATTGTCTTAATGTTTGAGACAGTACTTTATCATTCTGGCCTTGAACTCACTGTAGAGCC
CAGGAAGGACTTGGACTTGATCCTCTTGCTTCTGCCTGCCAAGTAGCCTGGATTCTAGACCTACACCACCAGGTGACCAGCTTGGTGCCTCCCACCTTTCTTAAAAATCTCAACAAAGCTGACATGAA
GGTAATGTCTGGGTGAGACAGTAGTTTGGTGTTTGTTTAGACCTTGTCTTCTGTTGGAATCGCCTTCTCATGTTTCTCTTTACGCTAACTCTTCTGTTGAAGTGTGGTTGGAGTCAGAGACATCCCAG
TTTTACCTTTGTTAGTACAGTTTGATAACTAGGAGAATGAATTAATGGTAAATGATAAGTGTAGACCAGTCGAGGTCTAATCGTGTACGCCAGCTACCTATTGGACACCCCAGGGCCTCACATGCTCC
AGGGTTCTGACTAAACTGTGTCTCGCTCTGACCTTCTTCCCCAGTATTTCTGTCCTGGTTAGTGGGATGACCCTCTCAAATTTACCTAAGCCAGAGATCAGGTAGTCATTTACTTACCGCTTACCATC
TGGTCAGGTCCAAATTCCTGTGCATTCTGCTATCTGCCTCCCTGCTGTTCTGGCTGGTGTCTGTTGAGAGAGTGATGTTTGCTGTACGTCTCTAAACTTCAATACTGAGAAAGTAATGTCTGCTCCTC
TGCACAGATGAATTCTCAAAGTCAGCAACAGCACAATTCTCATTCCTTTGAAAGGCTTTCAGCACCCAGGGTCAGTTTCTATTCGTTTCTTGTACTTTTCTTACCTGTGGAGAGAAGAGTCTGCACTA
GTTAACCTGACTCGACTTCTCGTCCGTATCTGTGCTAATTTGCATTGTATCCTGATGCCTAATTCTTATTTTTATTTGTTTACTTTTTAATGATTGCTTGGTAAACTTTATTAAGGCAAGAAGTATTG
CCTTACCTAGCACACTGCTGTTTGCTGCACTCAGGAATTCCTTCCCCACTAGACAGAGTCTTAGCTTCTGGAAGGCAGGGCCCTGCTTAGATTTTGTTTGTTTGTTTGTTTGTTTGCTTGTTTGTTTG
TTTTTGAGGCATGGTCTCACTCTAGTTTTAACTGTCC

hide sequence

RefSeq Acc Id:

XM_006253788 ⟹ XP_006253850

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	26,801,818 - 26,821,603 (-)	NCBI
mRatBN7.2	17	26,596,266 - 26,616,057 (-)	NCBI
Rnor_6.0	17	27,243,732 - 27,279,271 (-)	NCBI
Rnor_5.0	17	29,158,965 - 29,194,327 (-)	NCBI

Sequence:

show sequence

CCGTGCGCTCACAGCAGTTCTACCACTTCCTGTCTGAGGTGAGCTGCGATCATGGAGGCCGAGC
CTCCTCCCTTGGAAGAGCGGCGTCGGCTGCAGGAGGAGCTCAGCGAGTTCGTGGAGAGCTGCTGCAGGACACTGGAGGAGGTGACGGCGTCCCTGGGATGGAGCCTGGATCACCTGGACCCCGGGGAC
GAGGTGACGGCCGAGGATGAAATCACCATATGCCCTTATGATTCCAATCATCGCATGCCTAAATCATCACTACCAAAGCACATGGAATCTTGCAGACTGAGGAAACTGGGATATACCAAAGAGGAAGA
GGATGAAATGTACAATCCTACTTTTTTCTATGAAAATTTGAAGATTCCTTCAGTTACTTTGAATAAGGACTCACAGTTCCAGATAATTAAACAAGCTAGGACTACAGCTGGGAAAGATGGTGACTGTT
ATAGCCAAAGACTGTATTCTTCAGCGCCTGTTGAAGTTCCTCTGAATCACAAACGATCTGTTTGTGACCTCACACAAGCCGATCGCCTTGCCCTTTATGATTTCGTCATTGAGGAAACAAAGAAAAAG
CGCTCTGCTCCTCAAGTCATCGAAAATGACAGTGACCTGTTTGTAGATTTGGCTGCTAAAGTCAATCAAGATAATAGCCGAAAAAGTCCAAAATCTTACCTGGAAATCCTGGCAGAAGTGAGAGATTA
CAAAAGGAGACGCCAGTCCTACAGAGCTAAGAATGTCCATATAACCAAAAAGTCATACACCGAGGTAATTCGGGATGTGATAAAGGTGCACATGGAAGAGCTCAGTAACCATTGGCAAGAAGAGCAGG
AAAGGGCAGAAGATGGTGCTGAGAAGAATGAGGAAAGGCGATCGGCTTCGGTAGATTCACGGCAGTCTGGTGGGAGTTATTTGGATGTTGAAAGTTCACGGCATAGAAGGGCTCGGAGTAGGAGCCCA
CACAAACGAAAAAGAAATAAAGATAAAAGTTCTGACTCAAGAAGAAGGAAAGAAAGGCGAGTGTGTGCCCCCGAGGGATGGAGAAAGACATCATAGTCATAAAAGAAGAAAGCAAAAAATATAATCAG
ATTGTAAATGCATTAATTATGCTTATGAAATAAATATGCTGATATTTAATTATTATCTTTGCATAGGAGAAAATGGCTGTTAGGGTAGTGTAATGCTTATTACTTTAATAAATTCTTGAACCCACGGG
TCAAAATTGTACCTTACACATTTACATTTTCCTTCTATTTTAATAGAGTCTTGTTATTTGTTT

hide sequence

RefSeq Acc Id:

XM_039095479 ⟹ XP_038951407

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	26,801,818 - 26,821,603 (-)	NCBI
mRatBN7.2	17	26,596,266 - 26,616,057 (-)	NCBI

RefSeq Acc Id:

XM_063276160 ⟹ XP_063132230

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	26,810,320 - 26,821,605 (-)	NCBI


Protein RefSeqs	NP_001099577	(Get FASTA)	NCBI Sequence Viewer
	XP_006253849	(Get FASTA)	NCBI Sequence Viewer
	XP_006253850	(Get FASTA)	NCBI Sequence Viewer
	XP_038951407	(Get FASTA)	NCBI Sequence Viewer
	XP_063132230	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98257	(Get FASTA)	NCBI Sequence Viewer
	EDL98258	(Get FASTA)	NCBI Sequence Viewer
	EDL98259	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018508
	ENSRNOP00000018508.6
	ENSRNOP00000085198
	ENSRNOP00000085198.1
	ENSRNOP00000110712

RefSeq Acc Id:

NP_001099577 ⟸ NM_001106107

- UniProtKB:

A6J7A8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEAEPPPLEERRRLQEELSEFVESCCRTLEEVTASLGWSLDHLDPGDEVTAEDEITICPYDSNHRMPKSSLPKHMESCRLRKLGYTKEEEDEMYNPTFFYENLKIPSVTLNKDSQFQIIKQARTTAGK
DGDCYSQRLYSSAPVEVPLNHKRSVCDLTQADRLALYDFVIEETKKKRSAPQVIENDSDLFVDLAAKVNQDNSRKSPKSYLEILAEVRDYKRRRQSYRAKNVHITKKSYTEVIRDVIKVHMEELSNHW
QEEQERAEDGAEKNEERRSASVDSRQSGGSYLDVESSRHRRARSRSPHKRKRNKDKSSDSRRRKERDGERHHSHKRRKQKI

hide sequence

RefSeq Acc Id:

XP_006253850 ⟸ XM_006253788

- Peptide Label:

isoform X3

- Sequence:

show sequence

MEAEPPPLEERRRLQEELSEFVESCCRTLEEVTASLGWSLDHLDPGDEVTAEDEITICPYDSNHRMPKSSLPKHMESCRLRKLGYTKEEEDEMYNPTFFYENLKIPSVTLNKDSQFQIIKQARTTAGK
DGDCYSQRLYSSAPVEVPLNHKRSVCDLTQADRLALYDFVIEETKKKRSAPQVIENDSDLFVDLAAKVNQDNSRKSPKSYLEILAEVRDYKRRRQSYRAKNVHITKKSYTEVIRDVIKVHMEELSNHW
QEEQERAEDGAEKNEERRSASVDSRQSGGSYLDVESSRHRRARSRSPHKRKRNKDKSSDSRRRKERRVCAPEGWRKTS

hide sequence

RefSeq Acc Id:	XP_006253849 ⟸ XM_006253787
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A3E2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEAEPPPLEERRRLQEELSEFVESCCRTLEEVTASLGWSLDHLDPGDEVTAEDEITICPYDSNHRMPKSSLPKHMESCRLRKLGYTKEEEDEMYNPTFFYENLKIPSVTLNKDSQFQIIKQARTTAGK DGDCYSQRLYSSAPVEVPLNHKRSVCDLTQADRLALYDFVIEETKKKRSAPQVIENDSDLFVDLAAKVNQDNSRKSPKSYLEILAEVRDYKRRRQSYRAKNVHITKKSYTEVIRDVIKVHMEELSNHW QEEQERAEDGAEKNEERRSASVDSRQSGGSYLDVESSRHRRARSRSPHKRKRNKDKSSDSRRRKERRVCAPEVSSIVDSVVECRRVSYWSKLR hide sequence

Ensembl Acc Id:

ENSRNOP00000018508 ⟸ ENSRNOT00000018508

RefSeq Acc Id:	XP_038951407 ⟸ XM_039095479
- Peptide Label:	isoform X2
- UniProtKB:	D3ZJA5 (UniProtKB/TrEMBL), A6J7A9 (UniProtKB/TrEMBL)

Protein Domains

CHHC U11-48K-type

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZJA5-F1-model_v2	AlphaFold	D3ZJA5	1-337	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13700394

Promoter ID:

EPDNEW_R10916

Type:

multiple initiation site

Name:

Snrnp48_1

Description:

small nuclear ribonucleoprotein U11/U12 subunit 48

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	27,279,247 - 27,279,307	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-9684	BioCyc
Ensembl Genes	ENSRNOG00000013756	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000018508	ENTREZGENE
	ENSRNOT00000018508.7	UniProtKB/TrEMBL
	ENSRNOT00000110730	ENTREZGENE
	ENSRNOT00000110730.1	UniProtKB/TrEMBL
	ENSRNOT00000145911	ENTREZGENE
InterPro	TRM13/UPF0224_CHHC_Znf_dom	UniProtKB/TrEMBL
	UPF0224_FAM112_RNA_Proc	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:291060	UniProtKB/TrEMBL
NCBI Gene	291060	ENTREZGENE
PANTHER	PTHR21402:SF10	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	UPF0224	UniProtKB/TrEMBL
PhenoGen	Snrnp48	PhenoGen
PROSITE	ZF_CHHC_U11_48K	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000013756	RatGTEx
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8I6A3E2	ENTREZGENE, UniProtKB/TrEMBL
	A6J7A8	ENTREZGENE, UniProtKB/TrEMBL
	A6J7A9	ENTREZGENE, UniProtKB/TrEMBL
	D3ZJA5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-22	Snrnp48	small nuclear ribonucleoprotein U11/U12 subunit 48	Snrnp48	small nuclear ribonucleoprotein 48 (U11/U12)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-07-12	Snrnp48	small nuclear ribonucleoprotein 48 (U11/U12)	Snrnp48	small nuclear ribonucleoprotein 48k (U11/U12)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-06-12	Snrnp48	small nuclear ribonucleoprotein 48k (U11/U12)	RGD1309020	similar to RIKEN cDNA 6530403A03	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1309020	similar to RIKEN cDNA 6530403A03	RGD1309020_predicted	similar to RIKEN cDNA 6530403A03 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1309020_predicted	similar to RIKEN cDNA 6530403A03 (predicted)	LOC291060_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC291060_predicted	similar to RIKEN cDNA 6530403A03 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar