ACTG1P17 (actin gamma 1 pseudogene 17) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: ACTG1P17 (actin gamma 1 pseudogene 17) Homo sapiens
Analyze
Symbol: ACTG1P17
Name: actin gamma 1 pseudogene 17
RGD ID: 9685897
HGNC Page HGNC:51497
Description: INTERACTS WITH bisphenol A; lipopolysaccharide; S-(1,2-dichlorovinyl)-L-cysteine
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: VALIDATED
Related Functional Gene: ACTG1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381582,725,880 - 82,739,780 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1582,726,307 - 82,727,425 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl1582,725,873 - 82,738,904 (-)EnsemblGRCh38hg38GRCh38
GRCh371583,394,632 - 83,408,532 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361581,191,144 - 81,193,233 (-)NCBINCBI36Build 36hg18NCBI36
Celera1561,172,100 - 61,185,999 (+)NCBICelera
Cytogenetic Map15q25.2NCBI
HuRef1559,663,921 - 59,677,748 (-)NCBIHuRef
CHM1_11583,136,443 - 83,150,356 (-)NCBICHM1_1
T2T-CHM13v2.01580,590,135 - 80,604,046 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:12477932  


Genomics

Variants

.
Variants in ACTG1P17
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:314
Count of miRNA genes:283
Interacting mature miRNAs:291
Transcripts:ENST00000558391, ENST00000560958, ENST00000561222
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 9 1
Low 712 351 1119 185 1164 151 1644 324 2248 250 1125 1209 44 399 892 2
Below cutoff 1695 2524 600 433 742 310 2624 1799 1456 167 320 394 125 795 1821 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000558391
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1582,726,307 - 82,727,425 (-)Ensembl
RefSeq Acc Id: ENST00000560958
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1582,725,873 - 82,738,616 (-)Ensembl
RefSeq Acc Id: ENST00000561222
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1582,730,790 - 82,738,904 (-)Ensembl
RefSeq Acc Id: NR_036446
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381582,725,880 - 82,739,780 (-)NCBI
HuRef1559,663,921 - 59,677,748 (-)NCBI
CHM1_11583,136,443 - 83,150,356 (-)NCBI
T2T-CHM13v2.01580,590,135 - 80,604,046 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC ACTG1P17 COSMIC
Ensembl Genes ENSG00000259315 Ensembl
  ENSG00000293222 Ensembl
GTEx ENSG00000259315 GTEx
  ENSG00000293222 GTEx
HGNC ID HGNC:51497 ENTREZGENE
Human Proteome Map ACTG1P17 Human Proteome Map
NCBI Gene ACTG1P17 ENTREZGENE