ACTG1P20 (actin gamma 1 pseudogene 20) - Rat Genome Database

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Pathways
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Gene: ACTG1P20 (actin gamma 1 pseudogene 20) Homo sapiens
Analyze
Symbol: ACTG1P20
Name: actin gamma 1 pseudogene 20
RGD ID: 9685856
HGNC Page HGNC:51500
Description: INTERACTS WITH dexamethasone
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: VALIDATED
Related Functional Gene: ACTG1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,323,874 - 27,326,525 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,325,329 - 27,325,796 (+)EnsemblGRCh38hg38GRCh38
GRCh37127,650,365 - 27,653,016 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera126,047,554 - 26,050,205 (+)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef125,906,350 - 25,909,001 (+)NCBIHuRef
CHM1_1127,765,100 - 27,767,751 (+)NCBICHM1_1
T2T-CHM13v2.0127,165,108 - 27,167,759 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14702039   PMID:29507755   PMID:31091453  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:148
Interacting mature miRNAs:150
Transcripts:ENST00000486001
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1 79 5 2 2 8 14
Low 2253 2052 1460 397 1343 243 3546 1218 2444 283 1366 1539 168 1 1149 2058 6 2
Below cutoff 174 855 218 183 440 178 715 856 1185 107 64 49 6 51 643

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000486001
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl127,325,329 - 27,325,796 (+)Ensembl
RefSeq Acc Id: NR_033926
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38127,323,874 - 27,326,525 (+)NCBI
HuRef125,906,350 - 25,909,001 (+)NCBI
CHM1_1127,765,100 - 27,767,751 (+)NCBI
T2T-CHM13v2.0127,165,108 - 27,167,759 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC ACTG1P20 COSMIC
Ensembl Genes ENSG00000241547 Ensembl
GTEx ENSG00000241547 GTEx
HGNC ID HGNC:51500 ENTREZGENE
Human Proteome Map ACTG1P20 Human Proteome Map
NCBI Gene ACTG1P20 ENTREZGENE