EIF5A2P1 (eukaryotic translation initiation factor 5A2 pseudogene 1) - Rat Genome Database

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Gene: EIF5A2P1 (eukaryotic translation initiation factor 5A2 pseudogene 1) Homo sapiens
Analyze
Symbol: EIF5A2P1
Name: eukaryotic translation initiation factor 5A2 pseudogene 1
RGD ID: 9681713
HGNC Page HGNC:51467
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: EIF5A2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381572,041,177 - 72,041,781 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1572,041,194 - 72,041,653 (-)EnsemblGRCh38hg38GRCh38
GRCh371572,333,518 - 72,334,122 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1549,219,846 - 49,220,310 (-)NCBICelera
Cytogenetic Map15q23NCBI
HuRef1549,164,148 - 49,164,609 (-)NCBIHuRef
CHM1_11572,451,556 - 72,452,017 (-)NCBICHM1_1
T2T-CHM13v2.01569,860,101 - 69,860,705 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:211
Count of miRNA genes:202
Interacting mature miRNAs:205
Transcripts:ENST00000564027
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 91 148 113 8 227 5 481 91 260 26 309 183 4 96 334 2
Below cutoff 1217 1185 708 202 516 119 2240 1172 1143 195 679 837 89 649 1415 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000564027
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1572,041,194 - 72,041,653 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC EIF5A2P1 COSMIC
Ensembl Genes ENSG00000260576 Ensembl
GTEx ENSG00000260576 GTEx
HGNC ID HGNC:51467 ENTREZGENE
Human Proteome Map EIF5A2P1 Human Proteome Map
NCBI Gene EIF5A2P1 ENTREZGENE