Gm10961 (predicted gene 10961) - Rat Genome Database

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Gene: Gm10961 (predicted gene 10961) Mus musculus
Analyze
Symbol: Gm10961
Name: predicted gene 10961
RGD ID: 9680026
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: ENSMUSG00000078604
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393107,539,174 - 107,542,086 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3107,537,830 - 107,542,017 (+)EnsemblGRCm39 Ensembl
GRCm383107,631,601 - 107,634,770 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3107,631,322 - 107,633,090 (+)EnsemblGRCm38mm10GRCm38
Celera3109,964,147 - 109,967,112 (+)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.83NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm10961Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm10961Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm10961Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015



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Variants in Gm10961
141 total Variants

Predicted Target Of
Summary Value
Count of predictions:128
Count of miRNA genes:124
Interacting mature miRNAs:126
Transcripts:ENSMUST00000106703
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 42 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
1357599msrvh1_mmodifier of susceptibility to renal vascular hypertrophy/hyperplasia 1 (mouse)Not determined3107376936115624197Mouse

1 to 10 of 42 rows





RefSeq Transcripts XR_375960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000106703   ⟹   ENSMUSP00000102314
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3107,539,071 - 107,542,017 (+)Ensembl
GRCm38.p6 Ensembl3107,631,322 - 107,633,090 (+)Ensembl
Ensembl Acc Id: ENSMUST00000249335
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3107,539,170 - 107,541,723 (+)Ensembl
Ensembl Acc Id: ENSMUST00000334478
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3107,537,875 - 107,541,727 (+)Ensembl
Ensembl Acc Id: ENSMUST00000334479
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3107,538,861 - 107,541,727 (+)Ensembl
Ensembl Acc Id: ENSMUST00000334480
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3107,537,830 - 107,540,645 (+)Ensembl
Ensembl Acc Id: ENSMUST00000334481
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3107,537,876 - 107,540,628 (+)Ensembl
Ensembl Acc Id: ENSMUST00000334482
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3107,538,871 - 107,540,631 (+)Ensembl
RefSeq Acc Id: XR_375960
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393107,539,174 - 107,542,086 (+)NCBI
GRCm383107,631,601 - 107,634,770 (+)NCBI
Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-F6Z5I4-F1-model_v2 AlphaFold F6Z5I4 1-48 view protein structure



Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000078604 Ensembl
MGD MGI:3779172 ENTREZGENE
NCBI Gene Gm10961 ENTREZGENE
PhenoGen Gm10961 PhenoGen
RNAcentral URS00027EF6E7 RNACentral
  URS00027F6E9C RNACentral