Gm34350 (predicted gene, 34350) - Rat Genome Database

Name: Gm34350
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gm34350 (predicted gene, 34350) Mus musculus

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Symbol:

Gm34350

Name:

predicted gene, 34350

RGD ID:

9657777

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Previously known as:

Gm45103

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	67,452,937 - 67,480,157 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	67,452,992 - 67,479,366 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	67,803,189 - 67,831,071 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	67,819,250 - 67,829,618 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	7	65,256,426 - 65,286,470 (+)	NCBI		Celera
Cytogenetic Map	7	C	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25314306	Micab7_m	Microbial abundance of Bacteroidales Porphyromonadaceae Odoribacter 7 (mouse)					7	66754055	70749713	Mouse
25314307	Mlh1fc2_m	MLH1 foci count 2 (mouse)					7	6502999	133501729	Mouse
25314305	Vmm6_m	variable multisystem mineralization 6, eye (mouse)					7	61849748	102749207	Mouse
27226778	Femd11_m	femur midshaft diameter 11, 16 week (mouse)					7	56949748	134001729	Mouse
1357586	Mdmsc3_m	modifier of muscularity 3 (mouse)			Not determined		7	34447869	68448018	Mouse
38501068	Tip1_m	tuberculosis immunophenotype 1, spleen CFU (mouse)					7	3602999	72549748	Mouse
11252140	Fdr1_m	fat response to dietary restriction 1 (mouse)					7	41148820	75148965	Mouse
13506761	Tbthq1_m	trabecular bone thickness QTL 1 (mouse)					7	62349748	67749748	Mouse
26884381	Bzwq2_m	bi-zygomatic width QTL 2, 5 week (mouse)					7	65249748	96949207	Mouse
1301784	Ses2_m	salmonella enteritidis susceptibility 2 (mouse)			Not determined		7	67290094	101290240	Mouse
1301663	Skull9_m	skull morphology 9 (mouse)			Not determined		7	57326121	91326352	Mouse
10043926	Bw1n_m	body weight 1 in NSY (mouse)			Not determined		7	45161966	118693530	Mouse
1301383	Aem2_m	anti-erythrocyte autoantibody modifier 2 (mouse)			Not determined		7	64135424	98135653	Mouse
1301514	Rigs1_m	radiation induced gastroschisis 1 (mouse)			Not determined		7	36280015	92394346	Mouse
27095937	Ulnl7_m	ulna length 7, 10 week (mouse)					7	66449748	98349207	Mouse
1300878	Skts1_m	skin tumor susceptibility 1 (mouse)			Not determined		7	37891386	71891582	Mouse
11565101	Tsve1_m	variable short tail (Tsv) enhancer 1 (mouse)					7	55889508	87142720	Mouse
1300620	Pgia21_m	proteoglycan induced arthritis 21 (mouse)			Not determined		7	67290094	101290240	Mouse
13208555	Lgth10_m	body length 10 (mouse)					7	51649748	125599172	Mouse
26884408	Bzwq13_m	bi-zygomatic width QTL 13, 16 week (mouse)					7	61749748	121399223	Mouse
1300791	Abbp3_m	A/J and C57BL/6 blood pressure 3 (mouse)			Not determined		7	39673887	103510010	Mouse
10402488	Dipa2_m	drug induced psychomotor activation 2 (mouse)			Not determined		7	38421548	72421684	Mouse
13432171	Rosd1_m	rotarod saline difference 1 (mouse)					7	59194378	69004862	Mouse
10054064	Bwq11_m	body weight QTL 11 (mouse)			Not determined		7	51124954	85125093	Mouse
1357752	Tabw_m	tally ho asscoiated body weight (mouse)			Not determined		7	49193278	83193390	Mouse
10053685	Eae43_m	experimental allergic encephalomyelitis susceptibility 43 (mouse)			Not determined		7	51124954	85125093	Mouse
26884404	Huml1_m	humerus length 1, 5 week (mouse)					7	30199425	108999207	Mouse
10045622	Heal20_m	wound healing/regeneration 20 (mouse)			Not determined		7	34316887	68317043	Mouse
1301158	Eae4_m	susceptibility to experimental allergic encephalomyelitis 4 (mouse)			Not determined		7	19147398	141919804	Mouse
10412199	Sst2_m	susceptibility to tuberculosis 2 (mouse)			Not determined		7	18728794	119485380	Mouse
26884440	Sklq4_m	skull length QTL 4, 5 week (mouse)					7	65249748	126499172	Mouse
25823170	Hrsq7_m	host response to SARS QTL 7, log titer (mouse)					7	54819589	116822815	Mouse
1301082	Bbaa16_m	B.burgdorferi-associated arthritis 16 (mouse)			Not determined		7	36280015	116416877	Mouse
1301465	Egrm3_m	early growth rate (mouse)			Not determined		7	57326121	91326352	Mouse
1300952	Hcs1_m	hepatocarcinogenesis susceptibility 1 (mouse)			Not determined		7	57326121	91326352	Mouse
1559000	Ossc1_m	osteosarcoma susceptibility 1 (mouse)			Not determined		7	34053025	68053223	Mouse
12792978	Fbmd3_m	femoral bone mineral density 3, females only (mouse)					7	7050288	142367832	Mouse
1301826	Pgia3_m	proteoglycan induced arthritis 3 (mouse)			Not determined		7	67290094	101290240	Mouse
4141805	Sle19_m	systematic lupus erythematosus susceptibility 19 (mouse)			Not determined			30032485	81135653	Mouse
4141929	Chlq18_m	circulating hormone level QTL 18 (mouse)			Not determined		7	41148820	75148965	Mouse
27226751	Femd5_m	femur midshaft diameter 5, 10 week (mouse)					7	53249748	143153737	Mouse
1300722	Sle3_m	systemic lupus erythmatosus susceptibility 3 (mouse)			Not determined		7	3511728	87142720	Mouse
12880417	V125Dq5_m	vitamin D active form serum level QTL 5 (mouse)					7	45249748	79249748	Mouse
12880418	V125Dq6_m	vitamin D active form serum level QTL 6 (mouse)					7	52149748	86149748	Mouse
11532741	Tbrs5_m	tuberculosis resistance 5 (mouse)					7	49159227	83235415	Mouse
1302141	Fcsa6_m	femoral cross-sectional area 6 (mouse)			Not determined		7	48384461	82384607	Mouse
13506750	Tbthq2_m	trabecular bone thickness QTL 2 (mouse)					7	65659748	77549748	Mouse
27095916	Scvln15_m	sacral vertebrae length 2, 16 week (mouse)					7	61749748	123699223	Mouse
12801463	Rta1_m	retinal aging 1 (mouse)					7	67168027	89089989	Mouse
11553865	Stmm1c_m	skin tumor modifier of MSM 1c (mouse)					7	65788986	99788986	Mouse
11553866	Stmm1d_m	skin tumor modifier of MSM 1d (mouse)					7	65788986	99788986	Mouse
25314302	Vmm2_m	variable multisystem mineralization 2, heart (mouse)					7	47149748	74149748	Mouse
25314303	Vmm4_m	variable multisystem mineralization 4, kidney (mouse)					7	37299425	87049208	Mouse
25314301	Vmm3_m	variable multisystem mineralization 3, lung (mouse)					7	37299425	72049748	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_391566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_391567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC158296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000208898

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	67,468,998 - 67,479,366 (+)	Ensembl
GRCm38.p6 Ensembl	7	67,819,250 - 67,829,618 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000341190

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	67,452,992 - 67,471,971 (+)	Ensembl

RefSeq Acc Id:

XR_391566

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	67,455,558 - 67,480,157 (+)	NCBI
GRCm38	7	67,805,810 - 67,831,071 (+)	NCBI

Sequence:

show sequence

TTGAAGGATCCTCTGCTCCTCTCTGGAGCCAGCTTGAATGACAGCACTCTCACTGGCTGTCTAG
GTTGGTTGTGACATCCCAGAACCCAGTCCCTATATCAGGAGCAGTTGTGGTTTGCCTGCACCAT
GACAGCATGGCTTGTCCCTTCCTATGTGTGCCGGCCAACTCAAGTGTTGGCTTGTTCTGCTCTT
CATTCTGAGGTTGATCCCACCATAAGCTAGTCCTCAAGTCTTGATTTGGTTCTGTTCGGTTGCC
TGGATTCTGCCCTCTGTGCATGCCTTGAGACAGCTCTCTCCGGGGCAGGACCTTGCCTATCACT
CAGTGTTATCTACGCAGTCAATGATATCCTTGTCCACAGTCTGACGACATCTCCTGCTACAAGT
GACAAAACGCGGATGGTGATGGTGTGTCTGCCTGTCATAGTGTCTTTACTCTGGGTCTCTGCTT
TTGGTTTGCTGACACTTCACTTTGATATATTGAGGTGGGCAGGCAACGACAGGACAGTCGCATC
CTCTGCTGTAACAGCCAGGACAAGTGCTTCAGACATACAGCACTCCAAGGTTCCATCCACTGAG
AGATCACTGCTGCTGTTCAGGGGCTGAGCAAAGGCTTGTCATTCAGAAACTGGCCGCACCTTGT
CACCTGTCAGCACATCCTTGGGATCAGACTGACGCTTCAAGAAATGCGTTTAGCATCAAAGGGA
GTTTGCGGCTCATAGAGACAAGAGTTCAAACCTCGATGATCAGTCTACAAGGAGCGACAAGGTT
TTATGCTGTTTGCTTCCTGGAAACTGCTAGAGCTGTGAGCATCTAGTCCCACAAT

hide sequence

RefSeq Acc Id:

XR_391567

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	67,452,937 - 67,479,530 (+)	NCBI
GRCm38	7	67,803,189 - 67,831,071 (+)	NCBI

Sequence:

show sequence

CTCCCTCTGTGTGGGTGATGCCAAGGTTCAGAGGTCTGACAGCCCTGTCTAGCTCCTCTACAAG
TGTCACCTCTCTCGCCCCTCCCCAAGGTCTGAGGCTTCTCTCAGCCCTACTGACCCCCAGGCCC
GAGGGTCCTGAGCTTGGGCAACACCCAGGAGTAAGCTACTGCAGACAGCTCTCTCCGGGGCAGG
ACCTTGCCTATCACTCAGTGTTATCTACGCAGTCAATGATATCCTTGTCCACAGTCTGACGACA
TCTCCTGCTACAAGTGACAAAACGCGGATGGTGATGGTGTGTCTGCCTGTCATAGTGTCTTTAC
TCTGGGTCTCTGCTTTTGGTTTGCTGACACTTCACTTTGATATATTGAGGTGGGCAGGCAACGA
CAGGACAGTCGCATCCTCTGCTGTAACAGCCAGGACAAGTGCTTCAGACATACAGCACTCCAAG
GTTCCATCCACTGAGAGATCACTGCTGCTGTTCAGGGGCTGAGCAAAGGCTTGTCATTCAGAAA
CTGGCCGCACCTTGTCACCTGTCAGCACATCCTTGGGATCAGACTGACGCTTCAAGAAATGCGT
TTAGCATCAAAGGGAGTTTGCGGCTCATAGAGACAAGAGTTCAAACCTCGATGATCAGTCTACA
AGGAGCGACAAGGTAACCCAAGCAACACTTCCATCTAACAATAATAGTTTAAGGCAAGGGCACG
TCTAACCTGCAGCCCCACCCCCACCCATGATCACTATGAATGCAGCCTACATAACGTGTAAGCC
TACCTGCAGCCTTGTGGGACTT

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000109464	Ensembl
MGD	MGI:5593509	ENTREZGENE
NCBI Gene	Gm34350	ENTREZGENE
PhenoGen	Gm34350	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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