Gm11592 (predicted gene 11592) - Rat Genome Database

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Gene: Gm11592 (predicted gene 11592) Mus musculus
Analyze
Symbol: Gm11592
Name: predicted gene 11592
RGD ID: 9647596
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391197,171,520 - 97,174,462 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1197,170,932 - 97,174,469 (+)EnsemblGRCm39 Ensembl
GRCm381197,280,694 - 97,283,309 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1197,280,128 - 97,282,897 (+)EnsemblGRCm38mm10GRCm38
Celera11106,933,695 - 106,936,296 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1160.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm11592Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm11592Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm11592Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:24316575  



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Variants in Gm11592
112 total Variants

Predicted Target Of
Summary Value
Count of predictions:148
Count of miRNA genes:139
Interacting mature miRNAs:146
Transcripts:ENSMUST00000133160
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 59 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1196897693110603991Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse

1 to 10 of 59 rows






Ensembl Acc Id: ENSMUST00000133160
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1197,170,932 - 97,173,723 (+)Ensembl
GRCm38.p6 Ensembl1197,280,128 - 97,282,897 (+)Ensembl
Ensembl Acc Id: ENSMUST00000292659
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1197,171,020 - 97,174,064 (+)Ensembl
Ensembl Acc Id: ENSMUST00000292660
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1197,171,522 - 97,174,469 (+)Ensembl
Ensembl Acc Id: ENSMUST00000292661
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1197,171,511 - 97,173,723 (+)Ensembl
RefSeq Acc Id: XR_001780312
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391197,171,520 - 97,173,723 (+)NCBI
GRCm381197,280,694 - 97,282,897 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001780313
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391197,171,520 - 97,174,462 (+)NCBI
GRCm381197,280,694 - 97,283,309 (+)NCBI
Sequence:
RefSeq Acc Id: XR_880190
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391197,171,520 - 97,173,723 (+)NCBI
GRCm381197,280,694 - 97,282,897 (+)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000086680 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000292660 ENTREZGENE
  ENSMUST00000292661 ENTREZGENE
MGD MGI:3650504 ENTREZGENE
NCBI Gene Gm11592 ENTREZGENE
PhenoGen Gm11592 PhenoGen
RNAcentral URS0000769CBE RNACentral