A730035I17Rik (RIKEN cDNA A730035I17 gene) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: A730035I17Rik (RIKEN cDNA A730035I17 gene) Mus musculus
Analyze
Symbol: A730035I17Rik
Name: RIKEN cDNA A730035I17 gene
RGD ID: 9643081
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
Previously known as: Gm34285; predicted gene, 34285
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39598,330,977 - 98,333,843 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl598,330,980 - 98,333,843 (-)EnsemblGRCm39 Ensembl
GRCm38598,183,118 - 98,185,984 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl598,183,121 - 98,185,984 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5E3NCBI
cM Map547.77NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  



.

.
Variants in A730035I17Rik
94 total Variants

Predicted Target Of
Summary Value
Count of predictions:195
Count of miRNA genes:179
Interacting mature miRNAs:195
Transcripts:ENSMUST00000057889
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 54 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
10045978Tir10_mtrypanosome infection response 10 (mouse)Not determined598019649114021986Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse

1 to 10 of 54 rows





RefSeq Transcripts NR_153823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK019785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000057889
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl598,330,980 - 98,333,843 (-)Ensembl
GRCm38.p6 Ensembl598,183,121 - 98,185,984 (-)Ensembl
Ensembl Acc Id: ENSMUST00000197382
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl598,331,883 - 98,333,641 (-)Ensembl
GRCm38.p6 Ensembl598,184,024 - 98,185,782 (-)Ensembl
Ensembl Acc Id: ENSMUST00000197527
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl598,330,996 - 98,333,069 (-)Ensembl
GRCm38.p6 Ensembl598,183,137 - 98,185,210 (-)Ensembl
Ensembl Acc Id: ENSMUST00000198172
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl598,332,306 - 98,333,072 (-)Ensembl
GRCm38.p6 Ensembl598,184,447 - 98,185,213 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205851
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl598,333,155 - 98,333,843 (-)Ensembl
GRCm38.p6 Ensembl598,185,296 - 98,185,984 (-)Ensembl
RefSeq Acc Id: NR_153823
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39598,330,977 - 98,333,843 (-)NCBI
GRCm38598,183,118 - 98,185,984 (-)NCBI
Sequence:
GenBank Protein BAB31852 (Get FASTA)   NCBI Sequence Viewer  
  BAC31394 (Get FASTA)   NCBI Sequence Viewer  

RGD ID:15092901
Promoter ID:EPDNEWNC_M809
Type:initiation region
Name:A730035I17Rik_1
Description:RIKEN cDNA A730035I17 gene [Source:MGISymbol;Acc:MGI:3696858]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38598,185,965 - 98,186,025EPDNEWNC


1 to 11 of 11 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000045238 Ensembl
MGD MGI:3696858 ENTREZGENE
NCBI Gene A730035I17Rik ENTREZGENE
PhenoGen A730035I17Rik PhenoGen
RNAcentral URS00008118EA RNACentral
  URS0000811CF2 RNACentral
  URS0000811FA9 RNACentral
  URS0000811FC2 RNACentral
  URS0000CCDFC5 RNACentral
UniProt Q8BXY0_MOUSE UniProtKB/TrEMBL
  Q9CTW8_MOUSE UniProtKB/TrEMBL
1 to 11 of 11 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-08-07 A730035I17Rik  RIKEN cDNA A730035I17 gene  Gm34285  predicted gene, 34285  Symbol and/or name change 5135510 APPROVED
2018-02-20 Gm34285  predicted gene, 34285  A730035I17Rik  RIKEN cDNA A730035I17 gene  Data merged from RGD:2310162 737654 PROVISIONAL