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Gene: Lhx5as1 (LIM homeobox 5, antisense 1) Mus musculus

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Symbol:

Lhx5as1

Name:

LIM homeobox 5, antisense 1

RGD ID:

9642623

MGI Page

MGI

Description:

Is expressed in telencephalon.

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

Gm27199; Gm31976; predicted gene, 31976

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	120,557,721 - 120,569,832 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	120,557,719 - 120,569,865 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	120,419,656 - 120,431,767 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	120,419,659 - 120,431,767 (-)	Ensembl	GRCm38		mm10	GRCm38
Celera	5	117,503,664 - 117,515,934 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lhx5as1	Mouse	abnormal spatial working memory		IAGP		5509061		MGI	PMID:35196493
Lhx5as1	Mouse	decreased excitatory postsynaptic current amplitude		IAGP		5509061		MGI	PMID:35196493
Lhx5as1	Mouse	decreased miniature excitatory postsynaptic current amplitude		IAGP		5509061		MGI	PMID:35196493
Lhx5as1	Mouse	impaired spatial learning		IAGP		5509061		MGI	PMID:35196493
Lhx5as1	Mouse	reduced long-term potentiation		IAGP		5509061		MGI	PMID:35196493

PMID:14610273	PMID:24316575	PMID:33760820	PMID:34170322	PMID:35196493	PMID:37321213

Variants in Lhx5as1
735 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	115
Count of miRNA genes:	113
Interacting mature miRNAs:	114
Transcripts:	ENSMUST00000185026
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10412191	Bbaa24_m	B.burgdorferi-associated arthritis 24 (mouse)			Not determined		5	119945037	141700466	Mouse
1301399	Cpfd3_m	cerebellum pattern fissures (mouse)			Not determined		5	87386871	121387065	Mouse
25314315	Mlh1fc4_m	MLH1 foci count 4 (mouse)					5	74460661	132528839	Mouse
14746986	Manh58_m	mandible shape 58 (mouse)					5	102446283	136446283	Mouse
1300993	Hycdc_m	hypercapnic duty cycle (mouse)			Not determined		5	90561006	124561151	Mouse
1301126	Bwem1_m	body weight day 30 males 1 (mouse)			Not determined		5	87386871	121387065	Mouse
1300659	Pcd8ts1_m	p-glycoprotein positive CD8 T cell subset 1 (mouse)			Not determined		5	97021753	131021986	Mouse
1300913	Bwefm_m	body weight females and males day 10 (mouse)			Not determined		5	109439348	143439459	Mouse
4141081	Nidd7k_m	Nidd7 on KK-A (mouse)			Not determined			119945037	149347326	Mouse
10402486	Dipa1_m	drug induced psychomotor activation 1 (mouse)			Not determined		5	95465549	129465722	Mouse
10043958	Chldq12_m	cholesterol and HDL QTL 12 (mouse)			Not determined		5	87386871	121387065	Mouse
26884395	Humsd2_m	humerus midshaft diameter 2, 10 week (mouse)					5	70057343	132528839	Mouse
10412202	Bbaa26_m	B.burgdorferi-associated arthritis 26 (mouse)			Not determined		5	104583688	138555455	Mouse
1301543	Hypch_m	hypercholesterolemia (mouse)			Not determined		5	109238624	139118905	Mouse
12904945	Tammq2_m	tibialis anterior muscle mass QTL 2 (mouse)					5	100665965	134665965	Mouse
4142473	Chlq11_m	circulating hormone level QTL 11 (mouse)			Not determined		5	107906299	141906412	Mouse
11341716	Rvfs3_m	Rift Valley fever susceptibility 3 (mouse)					5	26441234	138455402	Mouse
12904959	Smmq1_m	soleus muscle mass QTL 1 (mouse)					5	100665965	134665965	Mouse
10412197	Bbaa25_m	B.burgdorferi-associated arthritis 25 (mouse)			Not determined		5	109167240	143167381	Mouse
13506928	Recrq8_m	recombination rate in male meiosis QTL 8 (mouse)					5	74460661	132528839	Mouse
27226719	Tibw6_m	tibia width 6, proximal, 16 week (mouse)					5	72857343	139985755	Mouse
1301457	Cfsw2_m	cystic fibrosis survival to weaning 2 (mouse)			Not determined		5	90561006	124561151	Mouse
1301974	Chab7_m	cholesterol absorption 7 (mouse)			Not determined		5	95233214	129233330	Mouse
1300827	Cora1_m	correlation in cytokine production 1 (mouse)			Not determined		5	115156883	149157015	Mouse
11528550	Sluc33_m	susceptibility to lung cancer 33 (mouse)					5	104386871	120711986	Mouse
1357662	Lprq4_m	lipoprotein QTL 4 (mouse)			Not determined		5	114021753	129632606	Mouse
4142064	Tmc1m4_m	Tmc1 modifier 4 (mouse)			Not determined		5	54500177	127001072	Mouse
10412239	Alpq7_m	alcohol preference QTL 7 (mouse)			Not determined		5	104705939	138705939	Mouse
1300801	Drb2_m	dopamine receptor binding 2 (mouse)			Not determined		5	87386871	121387065	Mouse
9587780	Afw16_m	abdominal fat weight QTL 16 (mouse)			Not determined		5	92830166	126830285	Mouse
1357644	Egrd1_m	early growth rate, direct effect 1 (mouse)			Not determined		5	95434580	129434786	Mouse
12859290	Criq2_m	Citrobacter rodentium infection QTL 2 (mouse)					5	101332579	135332579	Mouse
1300940	Actd3_m	activity-distance traveled 3 (mouse)			Not determined		5	96320385	130320533	Mouse
1301362	Prnr1_m	prion resistance 1 (mouse)			Not determined		5	89418876	146787935	Mouse
1558774	Lith17_m	lithogenic gene 17 (mouse)			Not determined		5	95465549	129465722	Mouse
1301624	Aevm2_m	autoimmune extremity vasculitis in MRL mice 2 (mouse)			Not determined		5	101863832	135864028	Mouse
10043890	Trigq4_m	triglyceride QTL 4 (mouse)			Not determined		5	107906299	141906412	Mouse
4141139	Hmtb4_m	hemostasis and thrombosis rebleeding time 4 (mouse)			Not determined			108762509	126882944	Mouse
11532736	Sluc33b_m	susceptibility to lung cancer 33b (mouse)					5	102945037	136945196	Mouse
4141519	Hmtb5_m	hemostasis and thrombosis bleeding time 5 (mouse)			Not determined			99949422	126882944	Mouse
1301858	Smdq1_m	segregation of mitochondrial DNA QTL 1 (mouse)			Not determined		5	97021753	131021986	Mouse
11049562	Lmr24f_m	leishmaniasis resistance 24f (mouse)					5	90320962	124321041	Mouse
1301857	Bglq14_m	body growth late QTL 14 (mouse)			Not determined		5	118948964	151758149	Mouse
13464251	Ahl21_m	age related hearing loss, early onset 21 (mouse)					5	109167240	143167381	Mouse
13464244	Ahl19_m	age related hearing loss, early onset 19 (mouse)					5	95465549	129465722	Mouse
1301226	Bbaa2_m	B.burgdorferi-associated arthritis 2 (mouse)			Not determined		5	115156883	149157015	Mouse
1300968	Skts4_m	skin tumor susceptibility 4 (mouse)			Not determined		5	89418876	124238239	Mouse
13464241	Ahl18_m	age related hearing loss, early onset 18 (mouse)					5	87386871	121387065	Mouse
1301102	Cia14_m	collagen induced arthritis 14 (mouse)			Not determined		5	113320385	138555455	Mouse
13464243	Ahl20_m	age related hearing loss, early onset 20 (mouse)					5	107906299	141906412	Mouse

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NR_166585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC129553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000185026

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,557,719 - 120,569,865 (-)	Ensembl
GRCm38.p6 Ensembl	5	120,419,659 - 120,431,767 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000240834

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,566,333 - 120,569,861 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000245245

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,561,849 - 120,569,863 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296158

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,557,719 - 120,569,859 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296159

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,557,719 - 120,569,818 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296160

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,557,721 - 120,569,818 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296161

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,557,721 - 120,569,817 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296162

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,557,721 - 120,569,816 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296163

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,557,719 - 120,569,741 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296164

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,557,721 - 120,569,523 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296165

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,557,719 - 120,569,220 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296166

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,557,721 - 120,569,184 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296167

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,557,721 - 120,565,732 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296168

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,561,859 - 120,569,661 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296169

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,557,723 - 120,565,469 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296170

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,561,859 - 120,569,222 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296171

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,561,859 - 120,569,165 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296172

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,557,721 - 120,564,675 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296173

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,557,719 - 120,564,086 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296174

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,557,721 - 120,563,280 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296175

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,566,586 - 120,569,827 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296176

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,566,586 - 120,569,827 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296177

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,566,586 - 120,569,823 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296178

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,566,586 - 120,569,820 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296179

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,566,586 - 120,569,818 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296180

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,566,586 - 120,569,673 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296181

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,561,859 - 120,564,571 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296182

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,566,586 - 120,569,067 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296183

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,561,854 - 120,564,135 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296184

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,561,868 - 120,564,112 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296185

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,561,865 - 120,563,930 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296186

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,561,859 - 120,563,907 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000296187

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	120,561,857 - 120,563,427 (-)	Ensembl

RefSeq Acc Id:

NR_166585

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	120,557,721 - 120,569,832 (-)	NCBI
GRCm38	5	120,419,656 - 120,431,767 (-)	NCBI

Sequence:

show sequence

ACAGCGTTGCGGTCAGGGCAGAGCAAAAAAAACAAGACATCAGTATTGCCGAGTATTTGCTAGTACCTGTTCCCAAGCTAAGATCTCTCATTGAAGTTGGAGCTCACTGATTCCACTAGACTGTCTGG
TCAGCAAGCAATCACCAGGAATCACCTGTAACCGTATCTGCCTGCCGTGACACTCACTGCCGCCTTGAATTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTTATCTTTTTA
TTTTCACACAAGCAGTTGGGAATATAACTCATATCCTCATGCCCACGCATCAAGCATGTTCCTAACTGAGCCATCTCCCCAGCTCTTGGAGTTTCTGGGTTTGTTCGGAAGCCTTCTCCCTCCTCCAG
AAAGAGGAGTGGAACAGGCACATGTGAATTCACTCTGTTGAGCCTAGAAGAGGTGAAAGAGAAAGGCTGCCCATTTTCTAGATGTTCCTCATGAGCTATATGCGTGTACCACGAAGGCTTGCTTGGAC
CCAGAGCTAGGGCTGACCTAACTGAGATGCTACCCAGGGGTTTCTGGCTCACTGTGGCCACCATGGCTCCACAAACCACCTACTTATAACAAAATAAAAAATTTTCTACAAGGA

hide sequence

RGD ID:

15092955

Promoter ID:

EPDNEWNC_M862

Type:

multiple initiation site

Name:

Gm27199_1

Description:

predicted gene 27199 [Source:MGI Symbol;Acc:MGI:5521042]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	5	120,431,762 - 120,431,822	EPDNEWNC

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000098649	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000185026	ENTREZGENE
MGD	MGI:5521042	ENTREZGENE
NCBI Gene	Gm27199	ENTREZGENE
PhenoGen	Lhx5as1	PhenoGen
RNAcentral	URS000198131E	RNACentral
	URS00025E3EA2	RNACentral
	URS00025E6DA3	RNACentral
	URS00025F4936	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-09-25	Lhx5as1	LIM homeobox 5, antisense 1	Gm27199	predicted gene 27199	Symbol and/or name updated	27372883	PROVISIONAL
2023-09-14	Gm27199	predicted gene 27199	Gm31976	predicted gene, 31976	Data merged from RGD:9610706	737654	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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