Mir6355 (microRNA 6355) - Rat Genome Database

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Gene: Mir6355 (microRNA 6355) Mus musculus
Analyze
Symbol: Mir6355
Name: microRNA 6355
RGD ID: 9639431
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Gm27473; mmu-mir-6355
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391859,712,702 - 59,712,807 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1859,712,702 - 59,712,807 (+)EnsemblGRCm39 Ensembl
GRCm381859,579,630 - 59,579,735 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1859,579,630 - 59,579,735 (+)EnsemblGRCm38mm10GRCm38
Celera1860,880,799 - 60,880,904 (+)NCBICelera
Cytogenetic Map18D3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:16381832   PMID:22319597  



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Variants in Mir6355
3 total Variants

Predicted Targets
Summary Value
Count of predictions:5175
Count of gene targets:2937
Count of transcripts:4395
Interacting mature miRNAs:mmu-miR-6355
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 45 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
12910791Pwgrq8_mpre-weaning growth rate QTL 8 (mouse)185802139969349142Mouse
4141431Msmr2_mMSM lymphoma resistance 2 (mouse)Not determined5497587361238870Mouse
10412183Sstapa2_mSuseptibility to Staphylococus aureus infection 2 (mouse)Not determined185679463066952485Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184513060468778777Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse

1 to 10 of 45 rows





RefSeq Transcripts NR_105773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC149059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000183687
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1859,712,702 - 59,712,807 (+)Ensembl
GRCm38.p6 Ensembl1859,579,630 - 59,579,735 (+)Ensembl
RefSeq Acc Id: NR_105773
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391859,712,702 - 59,712,807 (+)NCBI
GRCm381859,579,630 - 59,579,735 (+)NCBI
Celera1860,880,799 - 60,880,904 (+)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000098287 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000183687 ENTREZGENE
MGD MGI:5530855 ENTREZGENE
miRBase MI0021883 ENTREZGENE
NCBI Gene Mir6355 ENTREZGENE
PhenoGen Mir6355 PhenoGen
RNAcentral URS000075AFA0 RNACentral
  URS000075E890 RNACentral