Gm32004 (predicted gene, 32004) - Rat Genome Database

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Gene: Gm32004 (predicted gene, 32004) Mus musculus
Analyze
Symbol: Gm32004
Name: predicted gene, 32004
RGD ID: 9638649
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913107,660,132 - 107,701,900 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13107,660,250 - 107,701,845 (-)EnsemblGRCm39 Ensembl
GRCm3813107,523,632 - 107,565,400 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13107,524,061 - 107,565,331 (-)EnsemblGRCm38mm10GRCm38
Celera13111,864,346 - 111,906,799 (-)NCBICelera
Cytogenetic Map13D2.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm32004
1627 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142334Svtms_msurvival time modifier of Sod2 (mouse)Not determined13107613580119476372Mouse
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
12879496Fexq2_mfear expression QTL 2 (mouse)13100741519120883175Mouse
13824989Pbsq1_mpercent broken sperm QTL 1 (mouse)13102136508112136534Mouse
4141102Sod1m_msuperoxide dismutase 1, soluble, modifier (mouse)Not determined99739968110699911Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1378036508112036508Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
4141728Egaq4_mearly growth adjusted QTL 4 (mouse)Not determined87901985112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
25394543Skmw79_mskeletal muscle weight 79, soleus (mouse)13103286625107663775Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
25394542Skmw80_mskeletal muscle weight 80, TA (mouse)13104397730107663775Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse
25394545Skmw77_mskeletal muscle weight 77, EDL (mouse)13104421423107663775Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
25394544Skmw78_mskeletal muscle weight 78, gastroc (mouse)13104397730107663775Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
4141826Tbqt5_mtibia bone quality traits 5 (mouse)Not determined13103341617117043216Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse
4142400Tgq24_mtriglyceride QTL 24 (mouse)Not determined102602630120883175Mouse
14746974Manh75_mmandible shape 75 (mouse)1399386647120883175Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000224033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13107,660,929 - 107,701,826 (-)Ensembl
GRCm38.p6 Ensembl13107,524,429 - 107,565,326 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224941
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13107,660,884 - 107,701,829 (-)Ensembl
GRCm38.p6 Ensembl13107,524,384 - 107,565,329 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13107,673,510 - 107,701,831 (-)Ensembl
GRCm38.p6 Ensembl13107,537,010 - 107,565,331 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13107,660,561 - 107,701,823 (-)Ensembl
GRCm38.p6 Ensembl13107,524,061 - 107,565,323 (-)Ensembl
Ensembl Acc Id: ENSMUST00000313640
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13107,660,250 - 107,701,835 (-)Ensembl
Ensembl Acc Id: ENSMUST00000313641
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13107,660,250 - 107,701,810 (-)Ensembl
Ensembl Acc Id: ENSMUST00000313642
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13107,660,427 - 107,701,845 (-)Ensembl
Ensembl Acc Id: ENSMUST00000313643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13107,666,126 - 107,701,807 (-)Ensembl
Ensembl Acc Id: ENSMUST00000313644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13107,660,780 - 107,678,908 (-)Ensembl
RefSeq Acc Id: XR_382878
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913107,660,132 - 107,701,873 (-)NCBI
GRCm3813107,523,632 - 107,565,373 (-)NCBI
Sequence:
RefSeq Acc Id: XR_382879
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913107,660,412 - 107,701,900 (-)NCBI
GRCm3813107,523,912 - 107,565,400 (-)NCBI
Sequence:
Promoters
RGD ID:15094359
Promoter ID:EPDNEWNC_M2277
Type:initiation region
Name:Gm32004_1
Description:predicted gene, 32004 [Source:MGI Symbol;Acc:MGI:5591163]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813107,565,307 - 107,565,367EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000114534 Ensembl
MGD MGI:5591163 ENTREZGENE
NCBI Gene Gm32004 ENTREZGENE
PhenoGen Gm32004 PhenoGen