Hnf1aos1 (HNF1 homeobox A, opposite strand 1) - Rat Genome Database

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Gene: Hnf1aos1 (HNF1 homeobox A, opposite strand 1) Mus musculus
Analyze
Symbol: Hnf1aos1
Name: HNF1 homeobox A, opposite strand 1
RGD ID: 9633115
MGI Page MGI
Description: Is expressed in several structures, including gut; heart; liver; lung; and metanephros.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: Gm13824; Haster; Mi-Lnc70
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395115,106,802 - 115,135,985 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5115,106,843 - 115,136,105 (+)EnsemblGRCm39 Ensembl
GRCm385114,968,743 - 114,997,926 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5114,968,784 - 114,998,042 (+)EnsemblGRCm38mm10GRCm38
Celera5112,064,912 - 112,082,230 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.99NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hnf1aos1Mouse(1->4)-beta-D-glucan multiple interactionsEXP 6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of HNF1AOS1 mRNACTDPMID:36331819
Hnf1aos1Mouse2,3',4,4',5-Pentachlorobiphenyl increases expressionEXP 64804642 more ...CTDPMID:31388691
Hnf1aos1Mousedimethylarsinic acid multiple interactionsEXP 6480464[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results in decreased expression of HNF1AOS1 mRNACTDPMID:34876320
Hnf1aos1Mouseinulin multiple interactionsEXP 6480464[perfluorooctane sulfonic acid co-treated with Inulin] results in increased expression of HNF1AOS1 mRNACTDPMID:36331819
Hnf1aos1Mousemethylarsonic acid multiple interactionsEXP 6480464[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results in decreased expression of HNF1AOS1 mRNACTDPMID:34876320
Hnf1aos1Mouseperfluorooctane-1-sulfonic acid multiple interactionsEXP 6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of HNF1AOS1 mRNA more ...CTDPMID:36331819
Hnf1aos1Mousesodium arsenate multiple interactionsEXP 6480464[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results in decreased expression of HNF1AOS1 mRNACTDPMID:34876320
Hnf1aos1Mousesodium arsenite multiple interactionsEXP 6480464[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results in decreased expression of HNF1AOS1 mRNACTDPMID:34876320


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hnf1aos1Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hnf1aos1Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hnf1aos1Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:14610273   PMID:18799693   PMID:23040067   PMID:24200680   PMID:24316575   PMID:27899360   PMID:29716997   PMID:36202974  



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Variants in Hnf1aos1
2136 total Variants

Predicted Target Of
Summary Value
Count of predictions:433
Count of miRNA genes:323
Interacting mature miRNAs:348
Transcripts:ENSMUST00000125010, ENSMUST00000129609, ENSMUST00000131845
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 52 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301042Elmaz1_melevated maze behavior 1 (mouse)Not determined598019649116876624Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse

1 to 10 of 52 rows






Ensembl Acc Id: ENSMUST00000125010
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5115,107,942 - 115,136,105 (+)Ensembl
GRCm38.p6 Ensembl5114,969,920 - 114,998,042 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129609
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5115,106,843 - 115,135,908 (+)Ensembl
GRCm38.p6 Ensembl5114,968,784 - 114,997,849 (+)Ensembl
Ensembl Acc Id: ENSMUST00000131845
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5115,107,956 - 115,123,886 (+)Ensembl
GRCm38.p6 Ensembl5114,969,897 - 114,985,827 (+)Ensembl
Ensembl Acc Id: ENSMUST00000245580
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5115,107,950 - 115,136,105 (+)Ensembl
RefSeq Acc Id: XR_387597
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395115,106,802 - 115,135,985 (+)NCBI
GRCm385114,968,743 - 114,997,926 (+)NCBI
Sequence:
RefSeq Acc Id: XR_878697
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395115,106,802 - 115,135,985 (+)NCBI
GRCm385114,968,743 - 114,997,926 (+)NCBI
Sequence:
RefSeq Acc Id: XR_878698
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395115,106,804 - 115,135,985 (+)NCBI
GRCm385114,968,745 - 114,997,926 (+)NCBI
Sequence:
RefSeq Acc Id: XR_878699
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395115,106,805 - 115,135,985 (+)NCBI
GRCm385114,968,746 - 114,997,926 (+)NCBI
Sequence:
RefSeq Acc Id: XR_878700
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395115,106,805 - 115,135,985 (+)NCBI
GRCm385114,968,746 - 114,997,926 (+)NCBI
Sequence:
RGD ID:6887712
Promoter ID:EPDNEW_M7307
Type:single initiation site
Name:KY468058_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385114,969,884 - 114,969,944EPDNEW
RGD ID:15092937
Promoter ID:EPDNEWNC_M846
Type:single initiation site
Name:Hnf1aos1_1
Description:HNF1 homeobox A, opposite strand 1 [Source:MGISymbol;Acc:MGI:3652225]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385114,969,884 - 114,969,944EPDNEWNC


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000086054 Ensembl
MGD MGI:3652225 ENTREZGENE
NCBI Gene Hnf1aos1 ENTREZGENE
PhenoGen Hnf1aos1 PhenoGen
RNAcentral URS00007670CE RNACentral
  URS000076BDE0 RNACentral
  URS00025E5590 RNACentral
  URS00025E755A RNACentral